Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 120 2e-22
seq1705 95.1 8e-15
>seq1530
Length=119309
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| || | ||||| ||||| | ||| |||||||| || ||||| || |
Sbjct 25360 TACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGG 25419
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| ||| | |||| ||||||||||| || ||||| || | ||||||||||| | |
Sbjct 25420 ATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 25479
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || ||||| ||| || || | || ||| || | ||| |
Sbjct 25480 GAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTA 25539
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| |||||||| ||||| || || || || ||||| || |||||
Sbjct 25540 CTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 25588
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | || || ||||| | ||| |||||||| || ||||| || |
Sbjct 24904 TACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGG 24963
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || | |||| ||||||||||| || ||||| || | ||||||||||| | |
Sbjct 24964 ATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 25023
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || ||||| ||| ||||| | | ||| || | |||||
Sbjct 25024 GAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 25083
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || ||||| || ||||| || ||||| || ||||| || |||||
Sbjct 25084 CTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | ||| |||||||| || ||||| ||||
Sbjct 25132 TACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAG 25191
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || | | || ||||||||||| || ||||| || | ||||||||||| | |
Sbjct 25192 ATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAG 25251
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || ||||| ||| ||||| | | ||| || | |||||
Sbjct 25252 GAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 25311
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || || ||||| || ||||| || ||||| || |||||
Sbjct 25312 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||||||||| || | ||| || ||||| | ||| |||||||| || ||||| |||||
Sbjct 24677 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 24736
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | | || ||||||||||| || || || || | ||||||||||| | ||
Sbjct 24737 TAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 24796
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||||| || || ||||| ||| ||||| | | ||| || | ||||||
Sbjct 24797 GATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 24856
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| || || || || ||||| || ||||| || ||||| || |||||
Sbjct 24857 TTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
>seq1705
Length=31738
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||||||||| || | || || || || | || |||||||| || ||||| |||||
Sbjct 13724 ACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 13665
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | | || |||||||| || || || || |||| | |||||| || | ||
Sbjct 13664 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGG 13605
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| || || || ||||| | | || || | ||||||
Sbjct 13604 AATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAAC 13545
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|||||| |||||||| ||||| || ||||| || ||||| || ||||| |||
Sbjct 13544 TTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTTT 13493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334939554097463
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |