Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1530 163 2e-35 seq1705 122 8e-23 >seq1530 Length=119309 Score = 163 bits (180), Expect = 2e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || |||||||| |||||||| | || || | ||||| || || Sbjct 25592 AACAATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATC 25533 Query 25055 GTCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||||||||| | || | ||| |||||| || || ||||| |||||||| | Sbjct 25532 TTCCGACACTATCGA-TAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAG 25474 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | |||||||| || |||||||||||||| | | | ||| | ||| | Sbjct 25473 ATCAACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACT 25414 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || ||||| ||||| || ||||||||||| |||| ||||||| || Sbjct 25413 ACAACATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGG 25362 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || |||||||| ||||||| | ||||| || || ||| Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| || || ||||| || ||||| || | Sbjct 24844 GACACTATTGA--CAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATC 24787 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | ||||| || || |||||||||||||||| | | || | || |||| Sbjct 24786 AACAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACA 24727 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || |||||||||| | || ||||||| || Sbjct 24726 ACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGG 24678 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || ||||| |||| || | ||||| || || ||| Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| || || ||||| |||||||| || | Sbjct 25072 GACACTATTGA--CAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATC 25015 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||||||||| | | | || | ||| |||| Sbjct 25014 AACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACA 24955 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || |||||||||| |||| | ||||| || Sbjct 24954 ACATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGG 24906 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || |||||||| ||||||| | ||||| || || ||| Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| || || ||||| ||||| || || | Sbjct 25300 GACACTATTGA--CAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATC 25243 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||||||||||| | | || | || |||| Sbjct 25242 AACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACA 25183 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || |||||||||| | || | ||||| || Sbjct 25182 ACATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGG 25134 >seq1705 Length=31738 Score = 122 bits (134), Expect = 8e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || || ||||| || || ||||| | || || | ||||| || || Sbjct 13493 AAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAATC 13552 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 |||||||| || || || || || || ||| ||||| ||||| ||||||||| Sbjct 13553 TTCTGACACCATTGA--CAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCT 13610 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 |||||||| | | || || || || || ||||||||||||| | | ||| | || Sbjct 13611 GACCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGAC 13670 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| ||||| || |||| ||||| |||| ||||||| || Sbjct 13671 TACAACATCCAAAAGGAATCTACCTTACACTTAGTCTTAAGATTAAGAGGTGG 13723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318108340495