Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 318 7e-82
>seq1387
Length=15432
Score = 318 bits (352), Expect = 7e-82
Identities = 623/905 (69%), Gaps = 33/905 (4%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
|||||||||| ||||| || || |||| | |||||||| || || || || || |
Sbjct 2189 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGC 2248
Query 92850 CAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAA---TACTTTTCACC 92904
|| || || | || | || | |||||| | | |||||| | ||| | |||
Sbjct 2249 TAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACC 2308
Query 92905 GAT--CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962
| ||||| |||||||| || || |||||||| | || ||| ||||||| | |
Sbjct 2309 AAATGCAACT-----AATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTA 2363
Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022
|| ||||| |||| | || || |||| || || || || | ||||| || || ||
Sbjct 2364 CAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCA 2423
Query 93023 ACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTT-TTGTACGACATA 93078
|| ||||| ||| | | || || | | | | | ||| |||| | |||| | | ||
Sbjct 2424 ACAGCTTCAA-CAATAAT-CTTTTCCACGATT-TCTGGATCTGGTCTATTGTTCAA-ATG 2479
Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138
| | | ||| || ||||| || |||||||| ||||| |||| | || || |||||
Sbjct 2480 AGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATT 2539
Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198
||| ||||||||||| | | |||| |||||| | ||| || ||||| |||||
Sbjct 2540 TGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGA 2599
Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCA---AAATT 93255
||| ||| || |||||||| || || |||||||| || | | ||| ||| ||
Sbjct 2600 TCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGAC 2659
Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315
| | | || | |||||||| |||| |||||||| |||||| | | |||||||| |
Sbjct 2660 TTCAGTATCA---GTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAAT 2716
Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375
||| ||||| ||||||| |||||| || | | |||| || || ||||| ||
Sbjct 2717 ATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAAT 2776
Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435
||| || ||||| |||||||||| | ||| || || |||||| || || ||||| |
Sbjct 2777 TAAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGA 2836
Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495
| ||||||| | || || |||||| ||||| | || | | ||||||||| || ||
Sbjct 2837 TTTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAAT 2896
Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT--TATAAAATGTTTCTCATCATCT 93553
|||||| ||||| ||||| || || | | | ||| || |||| | | ||||||||
Sbjct 2897 ACCATCAGATGCAGCAAAGAATGCTA--AGACTCTTGAAATGAAATATCTTTCATCATCA 2954
Query 93554 TTAAGCTTATC---CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610
|| | ||||| |||||| || ||| || | ||| | |||||| ||||||||
Sbjct 2955 TTCAATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAA 3014
Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670
|| |||||||||||||| ||||| | | ||| || || |||||| ||||||||| ||
Sbjct 3015 AATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATA 3074
Query 93671 ACAAA 93675
|||||
Sbjct 3075 ACAAA 3079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556847762496520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |