Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1387 318 7e-82 >seq1387 Length=15432 Score = 318 bits (352), Expect = 7e-82 Identities = 623/905 (69%), Gaps = 33/905 (4%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||| || || |||| | |||||||| || || || || || | Sbjct 2189 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGC 2248 Query 92850 CAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAA---TACTTTTCACC 92904 || || || | || | || | |||||| | | |||||| | ||| | ||| Sbjct 2249 TAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACC 2308 Query 92905 GAT--CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 | ||||| |||||||| || || |||||||| | || ||| ||||||| | | Sbjct 2309 AAATGCAACT-----AATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTA 2363 Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 || ||||| |||| | || || |||| || || || || | ||||| || || || Sbjct 2364 CAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCA 2423 Query 93023 ACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTT-TTGTACGACATA 93078 || ||||| ||| | | || || | | | | | ||| |||| | |||| | | || Sbjct 2424 ACAGCTTCAA-CAATAAT-CTTTTCCACGATT-TCTGGATCTGGTCTATTGTTCAA-ATG 2479 Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 | | | ||| || ||||| || |||||||| ||||| |||| | || || ||||| Sbjct 2480 AGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATT 2539 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 ||| ||||||||||| | | |||| |||||| | ||| || ||||| ||||| Sbjct 2540 TGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGA 2599 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCA---AAATT 93255 ||| ||| || |||||||| || || |||||||| || | | ||| ||| || Sbjct 2600 TCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGAC 2659 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 | | | || | |||||||| |||| |||||||| |||||| | | |||||||| | Sbjct 2660 TTCAGTATCA---GTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAAT 2716 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 ||| ||||| ||||||| |||||| || | | |||| || || ||||| || Sbjct 2717 ATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAAT 2776 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 ||| || ||||| |||||||||| | ||| || || |||||| || || ||||| | Sbjct 2777 TAAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGA 2836 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||||||| | || || |||||| ||||| | || | | ||||||||| || || Sbjct 2837 TTTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAAT 2896 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT--TATAAAATGTTTCTCATCATCT 93553 |||||| ||||| ||||| || || | | | ||| || |||| | | |||||||| Sbjct 2897 ACCATCAGATGCAGCAAAGAATGCTA--AGACTCTTGAAATGAAATATCTTTCATCATCA 2954 Query 93554 TTAAGCTTATC---CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 || | ||||| |||||| || ||| || | ||| | |||||| |||||||| Sbjct 2955 TTCAATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAA 3014 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || |||||||||||||| ||||| | | ||| || || |||||| ||||||||| || Sbjct 3015 AATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATA 3074 Query 93671 ACAAA 93675 ||||| Sbjct 3075 ACAAA 3079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847762496520