Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1530 116 3e-21 >seq1530 Length=119309 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | | ||||||||||||||||| |||||||| ||||| |||||||| || Sbjct 25131 ATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 25190 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | | |||||| | |||||||||||| | || | ||| ||||| || || Sbjct 25191 GATAAT-GTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGG 25249 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| || || || || || | | |||| ||||| | ||||| Sbjct 25250 AGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTC 25309 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| | || || || ||||| ||||| Sbjct 25310 AACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| || |||||||||| |||||||| ||||| |||||||| ||| Sbjct 25359 ATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 25418 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | | ||||| | |||||||||||| | || | ||| ||||| || || Sbjct 25419 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25478 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || || ||| | ||| | | || | ||||||| ||||| Sbjct 25479 GGAATACCTTCCTTATCTTGGAT-TTTAGACTTAACGTTATCGATAGTGTCGGAAGATTC 25537 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAAT 114390 || || | ||| | || || ||||| | ||| || || ||||| ||||| | ||||| Sbjct 25538 TACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTG-TTAAT 25595 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| || | || |||||| |||||||||| |||||||| ||||| |||||||| || | Sbjct 24677 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 24736 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || | | |||||| | ||||||||||||| | || | ||| ||||| || || | Sbjct 24737 TAAT-GTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 24795 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | || ||||| || || || || || | | |||| ||||| | ||||| | Sbjct 24796 GGATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 24855 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| ||| | || || ||||| | || || || ||||| ||||| Sbjct 24856 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | ||| ||||||||||||| |||||||| ||||| |||||||| ||| Sbjct 24903 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 24962 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||||| | |||||||||||| | || | ||| ||||| || || Sbjct 24963 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25022 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || || | | |||| ||||| | ||||| Sbjct 25023 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25082 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || | || || || ||||| ||||| Sbjct 25083 ACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124809513276