Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1530 143 6e-29 seq1705 91.5 3e-13 >seq1530 Length=119309 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | ||||||||||||||||| || || || Sbjct 25397 TTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAA 25456 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| || ||||| ||||| |||||||| | || ||||| Sbjct 25457 AATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTT 25516 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||||||||| | || || ||||| ||||| | ||||||||| Sbjct 25517 ATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGAC 25576 Query 288462 GAATATCTGCATT----ATGTTATTCTAATATTT--TTAATAAT 288499 ||| || |||||| |||| || || |||| |||||||| Sbjct 25577 GAAAATTTGCATTGTTAATGTAGTTATATAATTTGATTAATAAT 25620 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || |||||||||||||| || ||||| Sbjct 24713 TTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAA 24772 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| |||||| ||||| ||||| |||||||| | || || || Sbjct 24773 AATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTGACATT 24832 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | ||||| ||||| ||||| | |||||||| Sbjct 24833 GTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGAC 24892 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 24893 GAAAATTTGCAT 24904 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | ||||||||||||||||| || || || Sbjct 24941 TTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAA 25000 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| || ||||| ||||| |||||||| | || || || Sbjct 25001 AATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATT 25060 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | || || ||||| || || | |||||||| Sbjct 25061 GTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGAC 25120 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 25121 GAAAATTTGCAT 25132 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || |||||||||||||| || || || Sbjct 25169 TTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAA 25228 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| ||||| |||| || || ||||| ||||| |||||||| | || || Sbjct 25229 AATCAAACGTTGTTG---ATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGAC 25285 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || ||||| ||||| | ||||| ||||| ||||| | ||||| Sbjct 25286 ATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTT 25345 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 25346 AACGAAAATTTGCAT 25360 >seq1705 Length=31738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||||||| || || ||||| Sbjct 13688 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAA 13629 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | ||||| | ||| || ||||| || || ||||| || | ||| || || Sbjct 13628 GATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATT 13569 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| ||||| | || || ||||| || || | |||||||| Sbjct 13568 GTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGAC 13509 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 13508 GAAAATTTGCATT 13496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179626090874894