Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 143 6e-29
seq1705 91.5 3e-13
>seq1530
Length=119309
Score = 143 bits (158), Expect = 6e-29
Identities = 167/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||||| | || | ||||||||||||||||| || || ||
Sbjct 25397 TTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAA 25456
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| ||| || ||||| ||||| |||||||| | || |||||
Sbjct 25457 AATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTT 25516
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| ||| ||||||||||| | || || ||||| ||||| | |||||||||
Sbjct 25517 ATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGAC 25576
Query 288462 GAATATCTGCATT----ATGTTATTCTAATATTT--TTAATAAT 288499
||| || |||||| |||| || || |||| ||||||||
Sbjct 25577 GAAAATTTGCATTGTTAATGTAGTTATATAATTTGATTAATAAT 25620
Score = 125 bits (138), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || |||||||||||||| || |||||
Sbjct 24713 TTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAA 24772
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| |||||| ||||| ||||| |||||||| | || || ||
Sbjct 24773 AATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTGACATT 24832
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| | ||||| ||||| ||||| | ||||||||
Sbjct 24833 GTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGAC 24892
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 24893 GAAAATTTGCAT 24904
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||||| | || | ||||||||||||||||| || || ||
Sbjct 24941 TTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAA 25000
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| ||| || ||||| ||||| |||||||| | || || ||
Sbjct 25001 AATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATT 25060
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| | || || ||||| || || | ||||||||
Sbjct 25061 GTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGAC 25120
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 25121 GAAAATTTGCAT 25132
Score = 109 bits (120), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || |||||||||||||| || || ||
Sbjct 25169 TTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAA 25228
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| ||||| |||| || || ||||| ||||| |||||||| | || ||
Sbjct 25229 AATCAAACGTTGTTG---ATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGAC 25285
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || |||| || ||||| ||||| | ||||| ||||| ||||| | |||||
Sbjct 25286 ATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTT 25345
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 25346 AACGAAAATTTGCAT 25360
>seq1705
Length=31738
Score = 91.5 bits (100), Expect = 3e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || ||||||||||| || || |||||
Sbjct 13688 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAA 13629
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | | ||||| | ||| || ||||| || || ||||| || | ||| || ||
Sbjct 13628 GATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATT 13569
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || ||||| ||||| | || || ||||| || || | ||||||||
Sbjct 13568 GTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGAC 13509
Query 288462 GAATATCTGCATT 288474
||| || ||||||
Sbjct 13508 GAAAATTTGCATT 13496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179626090874894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |