Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1530 89.7 5e-13 >seq1530 Length=119309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||||||||||||| | || |||||||| |||||||||||| Sbjct 24906 CCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 24965 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||||||||| | | | || | ||| ||||| || || || Sbjct 24966 AATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25025 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || |||||| || | |||| || | ||||| | || || || Sbjct 25026 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTG-TCAATAGTGTCAGAAGATTCAAC 25084 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | || || || ||||| ||||| Sbjct 25085 TTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||| ||| | |||||||||||||| | || |||||||| ||||||||||| | | Sbjct 25134 CCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 25193 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | || || | ||||||||| | | | || | ||| ||||| || ||||| Sbjct 25194 AAT-GTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGG 25252 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || |||||| || | |||| || | ||||| | || || | Sbjct 25253 AATACCTTCCTTATCTTGGATTTTAGACTTGACATTG-TCAATAGTGTCAGAAGATTCAA 25311 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || ||||| || | || || || ||||| ||||| Sbjct 25312 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 || |||||||||| | || |||||||| |||||||||||| | ||| | ||| Sbjct 25377 AACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCT 25436 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||||||||| | | | || | ||| ||||| || || || |||||||| || || Sbjct 25437 TCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 25496 Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 |||||| || | | || | ||||||| || || || || | || | || Sbjct 25497 TGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTC 25556 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || || ||||| ||||| Sbjct 25557 TTACCGGTTAAAGTCTTGACGAAAATTTGCAT 25588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250781256560