Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1530 125 6e-24 seq1705 104 2e-17 >seq1530 Length=119309 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| ||| | || |||||||||||||| || || ||| | ||| || Sbjct 25374 CTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCG 25433 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | ||||| ||||| || || || ||||| ||||| ||| Sbjct 25434 TCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 25493 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| | |||| | | | || | || | ||||||||||| || ||||| | |||| Sbjct 25494 TCTTGGA-TTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAAT 25552 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||| || || ||||||||||| Sbjct 25553 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 25588 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || || | ||| || | Sbjct 24690 CTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCA 24749 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | ||||| ||||| || || || || || ||||| ||| Sbjct 24750 TCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTA 24809 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | ||||| ||||| || ||||| | || | Sbjct 24810 TCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATG 24869 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||||||||| Sbjct 24870 GTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || || | ||| || | Sbjct 25146 CTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCA 25205 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | ||||| ||||| || || || ||||| ||||| ||| Sbjct 25206 TCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTA 25265 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | ||||| ||||| || ||||| | || | Sbjct 25266 TCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATG 25325 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||||||||| Sbjct 25326 GTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || |||||||||||||| || || ||| | ||| || Sbjct 24918 CTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCG 24977 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | ||||| ||||| || || || ||||| ||||| ||| Sbjct 24978 TCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 25037 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | ||||| ||||| || ||||| | |||| Sbjct 25038 TCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATG 25097 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || ||||||||||| Sbjct 25098 GTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 >seq1705 Length=31738 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || |||||||||||||| || || || | ||| || | Sbjct 13711 CTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCA 13652 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | || |||| ||| ||||| || ||||| ||||| || Sbjct 13651 TCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 13592 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || ||||| || | |||||| ||||| || ||||| | |||| Sbjct 13591 TCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATA 13532 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || ||||||||||| Sbjct 13531 GTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 13497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992617475080