Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1308 208 9e-49 seq1180 102 1e-16 seq1452 98.7 1e-15 >seq1308 Length=6085 Score = 208 bits (230), Expect = 9e-49 Identities = 834/1300 (64%), Gaps = 31/1300 (2%) Strand=Plus/Minus Query 111718 CACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG 111777 ||||||| | || || || ||||| ||||| || |||||||| |||||| | ||| Sbjct 5046 CACCAACTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATGTTTCTTAGTTG 4987 Query 111778 CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT 111837 | | || || |||||||| |||| ||||| | ||| | | |||||| || | Sbjct 4986 CCATGAAAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTT 4927 Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA 111897 ||||| | ||||||||||| || | || || ||| || | | | | | || || Sbjct 4926 CAAAGAGTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATA 4867 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || ||||| |||||| || | |||||||| || ||| | || || || ||| || Sbjct 4866 TTGCTGGTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACA 4807 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATC------TATCGCAGTCTATC 112011 | || || ||||| | |||| ||| | ||| || | | | || ||||| Sbjct 4806 CCGCACGTTATGTCGATCAAGGTGGTAAT---AAGAGACCAGGTGCTTTTGCCCTCTATT 4750 Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 | || |||||||| | ||||| | || || |||| | | || |||||| | | Sbjct 4749 TAGAACCATGGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAG 4690 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 | || | | | ||| | ||| | || | |||||||| ||| | || |||||| Sbjct 4689 AAGAAATTAGAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGC 4630 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 | || || | | ||| ||||| | | |||| || | | || || || | | | Sbjct 4629 GTGTGGAACAAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTG 4570 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 ||| ||||| || |||||| | || ||| || || ||| |||| | | Sbjct 4569 ATGTTTATGGTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTA 4510 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 || | || | | ||| | | ||| | | | ||||| || |||| Sbjct 4509 GACAAACTATTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTG 4450 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 |||| |||| |||| | || ||||| || ||||| |||||| |||||||||||||| | Sbjct 4449 GTACTCCATTTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAG 4390 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 || | || || || ||| | ||| ||||| | |||| | || || || Sbjct 4389 GTATTATTAAATCATCTAACTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAAG 4330 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| ||||| | || |||||||| | || || ||| || | ||| | || Sbjct 4329 TTGCTGTCTGTAATTTAGCTTCAATCGCCTTACCAGCGTTTGTTGA--AAAAGATGATGA 4272 Query 112492 -CATT-------TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543 |||| | ||| ||| ||| | || ||| |||| || | ||| || || | Sbjct 4271 TCATTCATGGTATAATTTTGATAAATTACATGAAATTACCAAGATTGTTACTCGTAATTT 4212 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGA 112602 ||| | |||||||||| | |||| ||| || ||| ||| || || || ||||||| Sbjct 4211 AAATAAAGTTATTGATCGTAATTATTATCCTGTTCCAGA-AGCCAAAAATTCAAATATGA 4153 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGC 112661 | | | ||||||| | | || ||||||||| | || |||| ||||| |||| Sbjct 4152 AAAATAGACCAATTGCTTTGGGGGTCCAAGGTTTGGCTGATGCTTTCATGGCTTTAAGAT 4093 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 || |||||||||| | ||||| | ||| | ||| | || ||||| || || || Sbjct 4092 TAC-CATTTGATTCTCAAGAAGCCAGAGAATTAAATATTCAAATTTTTGAAACCATTTAC 4034 Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 ||||| ||| |||| | | || || || | | || ||||||||| || | | | Sbjct 4033 CACGCTGCTGTTGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCCATATCAATCTTAT 3974 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 112841 | ||||| ||||| || |||||| | | |||| |||| | | |||| | ||||| Sbjct 3973 CAAGGTTCACCAGCATCCCAAGGGTTATTACAATATGATTTAT-GGAATAGAAAACCAA- 3916 Query 112842 CTTCACTA--CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 112897 || | || || ||||| || | || || || ||| || | || | | || Sbjct 3915 CTGAATTATGGGATTGGGATACTTTAAAACAAAATATGGCAA--AGCATGGATTAAGAAA 3858 Query 112898 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 112957 | |||||| | || || |||||||| || || || |||||||||||||||||||||| Sbjct 3857 CTCACTTTTGGTTGCTCCTATGCCAACTGCTTCAACATCACAAATCTTGGGTAATAATGA 3798 Query 112958 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 ||| |||||||| || || | ||||| ||| |||||| Sbjct 3797 ATGTTTTGAACCATATACTTCAAACATTTATTCCAGAAGA 3758 >seq1180 Length=50914 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 |||| ||||| | | || ||||||||||||||| ||||||||||||||||| || Sbjct 28022 TGGATGGCTATATTAGAATCCCAAACCGAGACTGGTGGCCCATATATGCTTTACAAGGAT 28081 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || ||||| |||| ||||||||||||||||| || || ||| |||||| | ||| Sbjct 28082 GCTTGTAATGAAAAATCAAATCAAAAGAATTTGGGGGTCATAAAGTCTTCCAATTTATGT 28141 Query 112398 ACAGAAATCTTGGAAT 112413 |||||| |||||| Sbjct 28142 TGTGAAATCATGGAAT 28157 >seq1452 Length=85594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/288 (68%), Gaps = 17/288 (6%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||||||||||||||| ||||| || || | ||| || |||||||| || || Sbjct 56964 TCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGTTCATCGTTTGC- 57022 Query 16032 GGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAATG 16082 ||||| ||| ||| || |||| || | |||||||| ||||||| Sbjct 57023 -----ACCACTTGCATTGCCTTTGGCACGCAGCTTCCCAATTGCATCAATTTCATCAACA 57077 Query 16083 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 ||||| || | || |||||| ||||| || || | || |||||||| || Sbjct 57078 AAGACAATCGAAGGGGCATTTTCACGAGCAGTTTTGAACAAGTCACGTACACGAGATGCA 57137 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATT 16201 || ||||| |||||||| || || || | | | ||| | | || ||| || || Sbjct 57138 CCTACACCGACAAACATTTCGACGAATTCAGAACCAGAA-ACAGAATAGAAAGGTACCCC 57196 Query 16202 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | |||||| ||| ||||| ||| |||||||||||||| |||||||| Sbjct 57197 TGCTTCACCAGCAGTGGCTTTGGCAAGAAGAGTCTTACCAGTACCTGG 57244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727866868560