Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 208 9e-49
seq1180 102 1e-16
seq1452 98.7 1e-15
>seq1308
Length=6085
Score = 208 bits (230), Expect = 9e-49
Identities = 834/1300 (64%), Gaps = 31/1300 (2%)
Strand=Plus/Minus
Query 111718 CACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG 111777
||||||| | || || || ||||| ||||| || |||||||| |||||| | |||
Sbjct 5046 CACCAACTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATGTTTCTTAGTTG 4987
Query 111778 CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT 111837
| | || || |||||||| |||| ||||| | ||| | | |||||| || |
Sbjct 4986 CCATGAAAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTT 4927
Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA 111897
||||| | ||||||||||| || | || || ||| || | | | | | || ||
Sbjct 4926 CAAAGAGTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATA 4867
Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957
|| ||||| |||||| || | |||||||| || ||| | || || || ||| ||
Sbjct 4866 TTGCTGGTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACA 4807
Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATC------TATCGCAGTCTATC 112011
| || || ||||| | |||| ||| | ||| || | | | || |||||
Sbjct 4806 CCGCACGTTATGTCGATCAAGGTGGTAAT---AAGAGACCAGGTGCTTTTGCCCTCTATT 4750
Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071
| || |||||||| | ||||| | || || |||| | | || |||||| | |
Sbjct 4749 TAGAACCATGGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAG 4690
Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131
| || | | | ||| | ||| | || | |||||||| ||| | || ||||||
Sbjct 4689 AAGAAATTAGAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGC 4630
Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191
| || || | | ||| ||||| | | |||| || | | || || || | | |
Sbjct 4629 GTGTGGAACAAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTG 4570
Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251
||| ||||| || |||||| | || ||| || || ||| |||| | |
Sbjct 4569 ATGTTTATGGTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTA 4510
Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311
|| | || | | ||| | | ||| | | | ||||| || ||||
Sbjct 4509 GACAAACTATTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTG 4450
Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371
|||| |||| |||| | || ||||| || ||||| |||||| |||||||||||||| |
Sbjct 4449 GTACTCCATTTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAG 4390
Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431
|| | || || || ||| | ||| ||||| | |||| | || || ||
Sbjct 4389 GTATTATTAAATCATCTAACTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAAG 4330
Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491
||||| ||||| | || |||||||| | || || ||| || | ||| | ||
Sbjct 4329 TTGCTGTCTGTAATTTAGCTTCAATCGCCTTACCAGCGTTTGTTGA--AAAAGATGATGA 4272
Query 112492 -CATT-------TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543
|||| | ||| ||| ||| | || ||| |||| || | ||| || || |
Sbjct 4271 TCATTCATGGTATAATTTTGATAAATTACATGAAATTACCAAGATTGTTACTCGTAATTT 4212
Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGA 112602
||| | |||||||||| | |||| ||| || ||| ||| || || || |||||||
Sbjct 4211 AAATAAAGTTATTGATCGTAATTATTATCCTGTTCCAGA-AGCCAAAAATTCAAATATGA 4153
Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGC 112661
| | | ||||||| | | || ||||||||| | || |||| ||||| ||||
Sbjct 4152 AAAATAGACCAATTGCTTTGGGGGTCCAAGGTTTGGCTGATGCTTTCATGGCTTTAAGAT 4093
Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721
|| |||||||||| | ||||| | ||| | ||| | || ||||| || || ||
Sbjct 4092 TAC-CATTTGATTCTCAAGAAGCCAGAGAATTAAATATTCAAATTTTTGAAACCATTTAC 4034
Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781
||||| ||| |||| | | || || || | | || ||||||||| || | | |
Sbjct 4033 CACGCTGCTGTTGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCCATATCAATCTTAT 3974
Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 112841
| ||||| ||||| || |||||| | | |||| |||| | | |||| | |||||
Sbjct 3973 CAAGGTTCACCAGCATCCCAAGGGTTATTACAATATGATTTAT-GGAATAGAAAACCAA- 3916
Query 112842 CTTCACTA--CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 112897
|| | || || ||||| || | || || || ||| || | || | | ||
Sbjct 3915 CTGAATTATGGGATTGGGATACTTTAAAACAAAATATGGCAA--AGCATGGATTAAGAAA 3858
Query 112898 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 112957
| |||||| | || || |||||||| || || || ||||||||||||||||||||||
Sbjct 3857 CTCACTTTTGGTTGCTCCTATGCCAACTGCTTCAACATCACAAATCTTGGGTAATAATGA 3798
Query 112958 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997
||| |||||||| || || | ||||| ||| ||||||
Sbjct 3797 ATGTTTTGAACCATATACTTCAAACATTTATTCCAGAAGA 3758
>seq1180
Length=50914
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337
|||| ||||| | | || ||||||||||||||| ||||||||||||||||| ||
Sbjct 28022 TGGATGGCTATATTAGAATCCCAAACCGAGACTGGTGGCCCATATATGCTTTACAAGGAT 28081
Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397
|| ||||| |||| ||||||||||||||||| || || ||| |||||| | |||
Sbjct 28082 GCTTGTAATGAAAAATCAAATCAAAAGAATTTGGGGGTCATAAAGTCTTCCAATTTATGT 28141
Query 112398 ACAGAAATCTTGGAAT 112413
|||||| ||||||
Sbjct 28142 TGTGAAATCATGGAAT 28157
>seq1452
Length=85594
Score = 98.7 bits (108), Expect = 1e-15
Identities = 195/288 (68%), Gaps = 17/288 (6%)
Strand=Plus/Plus
Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031
||||||||||||||||| ||||| || || | ||| || |||||||| || ||
Sbjct 56964 TCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGTTCATCGTTTGC- 57022
Query 16032 GGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAATG 16082
||||| ||| ||| || |||| || | |||||||| |||||||
Sbjct 57023 -----ACCACTTGCATTGCCTTTGGCACGCAGCTTCCCAATTGCATCAATTTCATCAACA 57077
Query 16083 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142
||||| || | || |||||| ||||| || || | || |||||||| ||
Sbjct 57078 AAGACAATCGAAGGGGCATTTTCACGAGCAGTTTTGAACAAGTCACGTACACGAGATGCA 57137
Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATT 16201
|| ||||| |||||||| || || || | | | ||| | | || ||| || ||
Sbjct 57138 CCTACACCGACAAACATTTCGACGAATTCAGAACCAGAA-ACAGAATAGAAAGGTACCCC 57196
Query 16202 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| |||||| ||| ||||| ||| |||||||||||||| ||||||||
Sbjct 57197 TGCTTCACCAGCAGTGGCTTTGGCAAGAAGAGTCTTACCAGTACCTGG 57244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620727866868560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |