Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 156 5e-33
seq1180 84.2 3e-11
seq1387 82.4 9e-11
>seq1308
Length=6085
Score = 156 bits (172), Expect = 5e-33
Identities = 580/900 (64%), Gaps = 17/900 (2%)
Strand=Plus/Plus
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
||||| | |||||| ||| ||||| || ||||| | ||| || ||||| |||||
Sbjct 4347 TATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCTTTTGATTG 4406
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
| || || || ||||| ||||| | ||| |||| ||||||||||| || || |
Sbjct 4407 GTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGGGCT 4466
Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCC 110511
| | ||||| | ||||| | || | |||| || | |||||||
Sbjct 4467 TCTAAAATGGAATACCATAATTTTTGTGCCTTAATAGTTTGTCTACCACGACCTTCACGT 4526
Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571
|| || || || || | |||||||| | || || ||||||| | || ||
Sbjct 4527 TCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATCAGGTAATCCAGGAGCT 4586
Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631
| | || | || | | ||||| ||| | || || | |||||| || | |||
Sbjct 4587 TCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACGCTTCATAAATAAATCA 4646
Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691
|||||||| | || | ||| | || | | | | ||||| | |||||| ||
Sbjct 4647 GGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGATTTTTT 4706
Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA----- 110746
| | || | ||| || | ||||| || ||||||||||| | ||||| || |
Sbjct 4707 CTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGAGGGCAAAAGCA 4766
Query 110747 --TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804
||| || |||| || ||| || | ||||| ||||| ||| ||||| || |
Sbjct 4767 CCTGG-TCTCTTATTACCACCT---TGATCGACATAACGTGCGGTGTTGTTGAAAACACG 4822
Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864
| ||| || ||||| || | ||| |||||| ||||| ||| | | | | |
Sbjct 4823 TACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCCCAGTAGA 4882
Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924
|||||| | || ||||| | |||||||||||| || | ||| ||| ||||||
Sbjct 4883 ACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATGCACATGT 4942
Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984
| | | ||| ||||||| |||||||| ||||| | || |||||| || || || ||
Sbjct 4943 TTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGAAACATGA 5002
Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044
||||| || |||| || || || ||||| || | || |||| ||||| |||| |
Sbjct 5003 CGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAA 5062
Query 111045 ACCTTGGGACATCTTGTTGTATGTGTCGAGTGC-GGAGGGTACATCTTTACCGTGAATAC 111103
||| |||||| | || || | || | | ||||| | ||| |||| |||||||
Sbjct 5063 CTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGG-ATATCCCTACCATGAATAC 5121
Query 111104 CAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATCAACACGC 111162
|||| || |||| ||||| | || ||| || |||| | | |||| |||| ||| |
Sbjct 5122 CAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTC-AGCAACTTTACCATTAACTCTT 5180
Query 111163 TGAAGGTAA-CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
| ||| |||| |||| || || | ||||| || | ||| ||||||||||||
Sbjct 5181 AATAAATAAGATCTT-TCTAAAGTTTTAAATCCAAAATAATTATAATTGAAATCACGATC 5239
>seq1180
Length=50914
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTC 109574
|||||| ||||| ||||||||| || |||||||| || || ||||||||||| ||
Sbjct 28990 CTGATCAATGAACTTACCACGATCCGCTGCCATGTCAATAATTACTTTTTGGCTAATCTC 28931
Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634
||| || || || |||||| ||||| |||||||| ||| ||| |||||||||
Sbjct 28930 CCACACGGTTTTATACAAACGCTTGAGCTCATCGGGGATGCTAGGGATTCCTTGAATAGA 28871
Query 109635 GCCA 109638
|||
Sbjct 28870 ACCA 28867
>seq1387
Length=15432
Score = 82.4 bits (90), Expect = 9e-11
Identities = 205/306 (67%), Gaps = 9/306 (3%)
Strand=Plus/Plus
Query 119753 ATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATTGTG 119812
||| |||||||| ||||||| | || || || ||| ||||| ||||| |
Sbjct 2756 ATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCAT 2815
Query 119813 TGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTGTT 119872
||| | |||| ||||| |||||| | |||||| ||||| | | |||||| |
Sbjct 2816 AATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTC 2875
Query 119873 GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT--T 119930
| | ||||||| |||||| ||||| ||| |||| ||||||||||||| |||
Sbjct 2876 AATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAAGA--CTCTTGAA 2933
Query 119931 ATG-AATTTCTGTTCATTATCGTTGAGTGT---TTTCCAGTCGTCCATATCTTTAGACAA 119986
||| ||| ||| ||||| ||| || | | | | |||| || | | ||| ||| ||
Sbjct 2934 ATGAAATATCT-TTCATCATCATTCAATTTATCTCTCCAATCATGTAAATCCTTACTTAA 2992
Query 119987 GTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTC 120046
|| | |||||||| ||||| || | ||| || || || | || ||||| |||
Sbjct 2993 ATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTC 3052
Query 120047 AGGATA 120052
| ||||
Sbjct 3053 ATGATA 3058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588962210599400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |