Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1308 156 5e-33 seq1180 84.2 3e-11 seq1387 82.4 9e-11 >seq1308 Length=6085 Score = 156 bits (172), Expect = 5e-33 Identities = 580/900 (64%), Gaps = 17/900 (2%) Strand=Plus/Plus Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | |||||| ||| ||||| || ||||| | ||| || ||||| ||||| Sbjct 4347 TATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCTTTTGATTG 4406 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 | || || || ||||| ||||| | ||| |||| ||||||||||| || || | Sbjct 4407 GTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGGGCT 4466 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCC 110511 | | ||||| | ||||| | || | |||| || | ||||||| Sbjct 4467 TCTAAAATGGAATACCATAATTTTTGTGCCTTAATAGTTTGTCTACCACGACCTTCACGT 4526 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 || || || || || | |||||||| | || || ||||||| | || || Sbjct 4527 TCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATCAGGTAATCCAGGAGCT 4586 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | | || | || | | ||||| ||| | || || | |||||| || | ||| Sbjct 4587 TCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACGCTTCATAAATAAATCA 4646 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 |||||||| | || | ||| | || | | | | ||||| | |||||| || Sbjct 4647 GGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGATTTTTT 4706 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA----- 110746 | | || | ||| || | ||||| || ||||||||||| | ||||| || | Sbjct 4707 CTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGAGGGCAAAAGCA 4766 Query 110747 --TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 ||| || |||| || ||| || | ||||| ||||| ||| ||||| || | Sbjct 4767 CCTGG-TCTCTTATTACCACCT---TGATCGACATAACGTGCGGTGTTGTTGAAAACACG 4822 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864 | ||| || ||||| || | ||| |||||| ||||| ||| | | | | | Sbjct 4823 TACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCCCAGTAGA 4882 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924 |||||| | || ||||| | |||||||||||| || | ||| ||| |||||| Sbjct 4883 ACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATGCACATGT 4942 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | | | ||| ||||||| |||||||| ||||| | || |||||| || || || || Sbjct 4943 TTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGAAACATGA 5002 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 ||||| || |||| || || || ||||| || | || |||| ||||| |||| | Sbjct 5003 CGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAA 5062 Query 111045 ACCTTGGGACATCTTGTTGTATGTGTCGAGTGC-GGAGGGTACATCTTTACCGTGAATAC 111103 ||| |||||| | || || | || | | ||||| | ||| |||| ||||||| Sbjct 5063 CTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGG-ATATCCCTACCATGAATAC 5121 Query 111104 CAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATCAACACGC 111162 |||| || |||| ||||| | || ||| || |||| | | |||| |||| ||| | Sbjct 5122 CAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTC-AGCAACTTTACCATTAACTCTT 5180 Query 111163 TGAAGGTAA-CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | ||| |||| |||| || || | ||||| || | ||| |||||||||||| Sbjct 5181 AATAAATAAGATCTT-TCTAAAGTTTTAAATCCAAAATAATTATAATTGAAATCACGATC 5239 >seq1180 Length=50914 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTC 109574 |||||| ||||| ||||||||| || |||||||| || || ||||||||||| || Sbjct 28990 CTGATCAATGAACTTACCACGATCCGCTGCCATGTCAATAATTACTTTTTGGCTAATCTC 28931 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| || || || |||||| ||||| |||||||| ||| ||| ||||||||| Sbjct 28930 CCACACGGTTTTATACAAACGCTTGAGCTCATCGGGGATGCTAGGGATTCCTTGAATAGA 28871 Query 109635 GCCA 109638 ||| Sbjct 28870 ACCA 28867 >seq1387 Length=15432 Score = 82.4 bits (90), Expect = 9e-11 Identities = 205/306 (67%), Gaps = 9/306 (3%) Strand=Plus/Plus Query 119753 ATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATTGTG 119812 ||| |||||||| ||||||| | || || || ||| ||||| ||||| | Sbjct 2756 ATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCAT 2815 Query 119813 TGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTGTT 119872 ||| | |||| ||||| |||||| | |||||| ||||| | | |||||| | Sbjct 2816 AATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTC 2875 Query 119873 GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT--T 119930 | | ||||||| |||||| ||||| ||| |||| ||||||||||||| ||| Sbjct 2876 AATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAAGA--CTCTTGAA 2933 Query 119931 ATG-AATTTCTGTTCATTATCGTTGAGTGT---TTTCCAGTCGTCCATATCTTTAGACAA 119986 ||| ||| ||| ||||| ||| || | | | | |||| || | | ||| ||| || Sbjct 2934 ATGAAATATCT-TTCATCATCATTCAATTTATCTCTCCAATCATGTAAATCCTTACTTAA 2992 Query 119987 GTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTC 120046 || | |||||||| ||||| || | ||| || || || | || ||||| ||| Sbjct 2993 ATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTC 3052 Query 120047 AGGATA 120052 | |||| Sbjct 3053 ATGATA 3058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962210599400