Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_015780.1
Length=205791
Score E
Sequences producing significant alignments: (Bits) Value
seq1163 145 1e-29
seq1180 89.7 7e-13
>seq1163
Length=41016
Score = 145 bits (160), Expect = 1e-29
Identities = 215/297 (72%), Gaps = 6/297 (2%)
Strand=Plus/Minus
Query 104903 AACTTGTTAAATGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTA 104962
|| ||||||| ||||| ||||| || | ||| | | ||||||||| ||| | | |||
Sbjct 8149 AAGTTGTTAAGTGAAAAAGGTGTCAAGATTTGGGAAGGTAATGGTTCTCGTGAATATTTG 8090
Query 104963 GATTCTTGTGGATTTCACTT-TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCA 105021
|| || ||||| ||| ||| ||||||||||||||| || ||||||| || ||
Sbjct 8089 GACAATTTGGGATTA-ACTGATCGTCGAGAAGGTGATTTAGGTCCGGTTTATGGGTTCCA 8031
Query 105022 ATGGAGACATGCTGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGG-TA 105080
|||||||||| ||||||| | |||| || |||||||| || ||||| || ||||| ||
Sbjct 8030 ATGGAGACATTTTGGAGCTGAGTATAAAGATTGTGATACTGATTATACTGGTCAAGGATA 7971
Query 105081 TAGACCAATTAAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTG-TCGAAGAATA 105139
| ||||||||| | || ||| ||| || ||| | || || || | |||||||
Sbjct 7970 T-GACCAATTACACGACGTGATA-AAAAAATTAAAGACAAATCCATATGATAGAAGAATT 7913
Query 105140 ATTATAGATAGTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCAT 105196
||||| | ||||||| | | | || || | |||||||||||||| ||||||
Sbjct 7912 ATTATGTCTGCTTGGAATCCGCCTGATTTTGCAAAGATGGCTCTTCCACCATGTCAT 7856
>seq1180
Length=50914
Score = 89.7 bits (98), Expect = 7e-13
Identities = 172/251 (69%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004
||||| | || || | |||||||| | || ||||||||| ||||||||||||
Sbjct 34408 ATTTTCTTTGGACCGATTTACTATCAAAAATTGAAGCATATGGTTTTGGATAAAATGCAT 34467
Query 127005 GCTAGA---AGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTTCC 127061
|| ||| || | || |||| | || ||| | ||||||| | ||| | ||
Sbjct 34468 GCAAGAGCAAG--AGGGCCAAG-AGCAGTTTTAACCAGACAACCAACCGAAGGTAGATCA 34524
Query 127062 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCC 127121
|| |||||| || ||||| ||||||||||||| ||||||| || | | |||| |||
Sbjct 34525 AGAGATGGTGGTTTGAGATTGGGAGAAATGGAAAGAGATTGTGTTATAGCATATGGTGCC 34584
Query 127122 ACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGT 127181
| ||||| ||| |||||| | | ||| || ||| | ||| || ||||| | |||
Sbjct 34585 TCTCAATTGTTATTGGAAAGATTAATGATATCATCTGATGCATTTGAAGTTGATATTTGT 34644
Query 127182 ACAAATTGTGG 127192
| || |||||
Sbjct 34645 AATAAATGTGG 34655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658387785135080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |