Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1163 145 1e-29 seq1180 89.7 7e-13 >seq1163 Length=41016 Score = 145 bits (160), Expect = 1e-29 Identities = 215/297 (72%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 104903 AACTTGTTAAATGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTA 104962 || ||||||| ||||| ||||| || | ||| | | ||||||||| ||| | | ||| Sbjct 8149 AAGTTGTTAAGTGAAAAAGGTGTCAAGATTTGGGAAGGTAATGGTTCTCGTGAATATTTG 8090 Query 104963 GATTCTTGTGGATTTCACTT-TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCA 105021 || || ||||| ||| ||| ||||||||||||||| || ||||||| || || Sbjct 8089 GACAATTTGGGATTA-ACTGATCGTCGAGAAGGTGATTTAGGTCCGGTTTATGGGTTCCA 8031 Query 105022 ATGGAGACATGCTGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGG-TA 105080 |||||||||| ||||||| | |||| || |||||||| || ||||| || ||||| || Sbjct 8030 ATGGAGACATTTTGGAGCTGAGTATAAAGATTGTGATACTGATTATACTGGTCAAGGATA 7971 Query 105081 TAGACCAATTAAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTG-TCGAAGAATA 105139 | ||||||||| | || ||| ||| || ||| | || || || | ||||||| Sbjct 7970 T-GACCAATTACACGACGTGATA-AAAAAATTAAAGACAAATCCATATGATAGAAGAATT 7913 Query 105140 ATTATAGATAGTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCAT 105196 ||||| | ||||||| | | | || || | |||||||||||||| |||||| Sbjct 7912 ATTATGTCTGCTTGGAATCCGCCTGATTTTGCAAAGATGGCTCTTCCACCATGTCAT 7856 >seq1180 Length=50914 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 ||||| | || || | |||||||| | || ||||||||| |||||||||||| Sbjct 34408 ATTTTCTTTGGACCGATTTACTATCAAAAATTGAAGCATATGGTTTTGGATAAAATGCAT 34467 Query 127005 GCTAGA---AGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTTCC 127061 || ||| || | || |||| | || ||| | ||||||| | ||| | || Sbjct 34468 GCAAGAGCAAG--AGGGCCAAG-AGCAGTTTTAACCAGACAACCAACCGAAGGTAGATCA 34524 Query 127062 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCC 127121 || |||||| || ||||| ||||||||||||| ||||||| || | | |||| ||| Sbjct 34525 AGAGATGGTGGTTTGAGATTGGGAGAAATGGAAAGAGATTGTGTTATAGCATATGGTGCC 34584 Query 127122 ACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGT 127181 | ||||| ||| |||||| | | ||| || ||| | ||| || ||||| | ||| Sbjct 34585 TCTCAATTGTTATTGGAAAGATTAATGATATCATCTGATGCATTTGAAGTTGATATTTGT 34644 Query 127182 ACAAATTGTGG 127192 | || ||||| Sbjct 34645 AATAAATGTGG 34655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658387785135080