Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 167 2e-36
seq1705 134 1e-26
>seq1530
Length=119309
Score = 167 bits (184), Expect = 2e-36
Identities = 176/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||||||| | ||| |||||||| | |||||||| ||||| || ||||| ||||
Sbjct 25362 CCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 25421
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||||| | || || ||||| ||||| ||||| |||||||| |||||||| || |||
Sbjct 25422 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25481
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||| ||||| || || | || | |||||| || | ||| |||
Sbjct 25482 ATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACT 25541
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474
|| | || | || || ||||||||||| || || || || ||||| ||||
Sbjct 25542 TCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGTTA 25593
Score = 161 bits (178), Expect = 8e-35
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || | ||||||||||| | |||||||| ||||| || ||||| || |
Sbjct 25134 CCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 25193
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| |||| || ||||| ||||| ||||| |||||||| |||||||| || |||
Sbjct 25194 AATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 25253
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||| ||||| || ||| | || | ||||||||| | ||| |||
Sbjct 25254 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25313
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||| || || |||||||| || || || || || |||||
Sbjct 25314 TCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || | |||||||||||| | |||||||| ||||| || ||||| ||||
Sbjct 24906 CCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 24965
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | || || ||||| ||||| ||||| |||||||| |||||||| || |||
Sbjct 24966 AATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25025
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||| ||||| || ||| | || | ||||||||| | ||| |||
Sbjct 25026 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25085
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | || | || || || ||||| || || || || || |||||
Sbjct 25086 TCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
>seq1705
Length=31738
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||||||| | ||| ||||| || | ||||||||| ||||| || ||||| || |
Sbjct 13723 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 13664
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||||| |||| || ||||||||||| || || || || | ||||| || || |||
Sbjct 13663 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGA 13604
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || ||||| || || ||| ||| | || | |||||||| | ||| |||
Sbjct 13603 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 13544
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | || | || || || ||||| || || || || || |||||
Sbjct 13543 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 13497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396269354078661
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |