Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1308 311 4e-80 seq1180 156 2e-33 >seq1308 Length=6085 Score = 311 bits (344), Expect = 4e-80 Identities = 1009/1538 (66%), Gaps = 63/1538 (4%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| |||| | ||||||||| | | ||||||||| ||||||||||||||||| Sbjct 3741 AATTCACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 3800 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 ||||| || |||||||| || || || || |||||||| || | || || || ||| Sbjct 3801 TTATTACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTT 3860 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAAC 25195 || || |||| || | || | ||||||||| |||||||||| | | || | Sbjct 3861 CTTAATCCATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCA----TAATTCAGT 3916 Query 25196 TCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGCAGGCGA---TTGA 25252 | | | || ||| |||||||| ||||||| || || | ||| || || |||| Sbjct 3917 TGGTTTTC--TATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAACCTTGA 3974 Query 25253 TCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCA 25312 | | | |||| ||| ||||| | | || | || | || || | ||||| Sbjct 3975 TAAGA--TTGA-TATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCG 4031 Query 25313 TAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCA 25372 | || || |||||||||| | ||||| | |||| || ||| || | Sbjct 4032 TGGTAAATGGTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGGT 4091 Query 25373 ATTTCCATTAAGGC--GAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGAT 25430 | | | | ||| | ||| | ||| || || || || || || || ||| ||| | || Sbjct 4092 AAT--CTTAAAGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTAT 4149 Query 25431 GTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTAT 25490 ||| |||| | | | ||||| ||||| |||| ||| || || |||| Sbjct 4150 TTTTCATATTTGAATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTAT 4209 Query 25491 CTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGC- 25549 || ||| | ||| ||| || |||| || | | | | ||||||| | | Sbjct 4210 TTAAATTACGAGTAACAATCTTGGTA-ATTT---CATGTAATTTA--TCAAAATTATACC 4263 Query 25550 -TTATCGTTTAT-ATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAA 25607 | | | | || |||| ||| ||||| | ||| |||||||| ||||||||||| | Sbjct 4264 ATGAATGATCATCATCTTTTTCAACAAACGCTGGTAAGGCGATTGAAGCTAAATTACAGA 4323 Query 25608 CAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATACATAAGTTGCTAGATTTG 25666 |||| ||||| | || | ||||||||| || || ||||||||| ||||| Sbjct 4324 CAGCAACTTCTT-CAGGTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTA 4382 Query 25667 ATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATA 25725 || | || ||||||||||||| | | ||| |||| |||||||||| | | | Sbjct 4383 ATAATACCTAAATTCTTTTGATTGGTCTTTTCATT-ACAAGCATCTTTATATAACATAAA 4441 Query 25726 TGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTT--T 25783 ||| || || |||||| |||| | | ||||||| | ||| | || | || || | Sbjct 4442 TGGAGTACCAGTTTCAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAAT 4501 Query 25784 ACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGA 25843 | ||| | ||| | | ||| ||| || | |||| || | || ||||||||| | Sbjct 4502 AGTTTGTCTACCACG--ACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCA 4559 Query 25844 TTTATTTTC-TCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAA 25902 || | |||| || ||| ||| | || | || | ||||| Sbjct 4560 CC-ATAAACATCAGGTAAT------CCAG-------GAGCTTCAT--TAGGGGAAAATAA 4603 Query 25903 ATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATA 25962 ||||||| ||||||| || || || |||||||||||| |||||||| | ||| Sbjct 4604 TGTCCAATCACCATTTTGTTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGG 4663 Query 25963 AAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATC 26022 ||||||||||| ||||| ||||||||||| || ||||| ||| | | ||| | ||||| Sbjct 4664 GAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATC 4723 Query 26023 AAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCC 26082 |||||||||||| ||||||||||||||||||| |||||| |||| ||| || || Sbjct 4724 AAAAATATCTGAATGCCATGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACC 4783 Query 26083 ACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGT 26142 ||||||||| || || | ||| || | |||||||| | ||| || | |||| | || Sbjct 4784 ACCTTGATCGACATAACGTGCGGTGTTGTTGAAAACACGTACCATGGGGA-TAATACCGT 4842 Query 26143 TGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAA 26201 || || | || || || | | ||| | | || || || | ||||| ||| ||| | Sbjct 4843 TGGAAGTACCATTAGTACCAGCAATATAAGCCCCAGTAGAACGAATATTATGAATATGTA 4902 Query 26202 TACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGAAACTGTATCGAAAAT 26259 ||| || |||||||| | |||||||| |||||| | | ||| ||||| |||| Sbjct 4903 AACCAATACCACCAGCACTCTTTGAAATCAATGCACATGTTTTCAAA--GTATCATAAAT 4960 Query 26260 TCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGT 26319 || | || |||| ||||||| | | ||| ||||| || || | ||| | | | Sbjct 4961 CCCATCAATTGAATCATCTTTCATGGCAACTAAGAAACATGACGACATTTGTGGACTTGG 5020 Query 26320 TGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAAAGC--T 26377 || || | ||||||||| || |||| | ||||||| || | ||| | | | | Sbjct 5021 GGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAA--CTTTTGTGACATCATA 5078 Query 26378 GTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAAC 26437 |||||| ||||| |||| | ||||| | | || |||| || ||| | Sbjct 5079 TTATAAGATTCAATAACTCGAGGGATATCCCTACCATGAATACCAATTGCCACTCTCATG 5138 Query 26438 CACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTT 26497 | || ||| |||| |||| || ||| | | |||| | ||||||||| || Sbjct 5139 ATTAAATGTTGTGGTCTTTCAGCAACTTTA---CCATTAACTCTTAATAAATAAGATCTT 5195 Query 26498 TCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535 ||||||||||| ||||||||||||| || ||||||||| Sbjct 5196 TCTAAAGTTTTAAATCCAAAATAATTATAATTGAAATC 5233 >seq1180 Length=50914 Score = 156 bits (172), Expect = 2e-33 Identities = 321/474 (68%), Gaps = 10/474 (2%) Strand=Plus/Minus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 || || |||| | ||||| ||| || || | || | ||| | ||| |||||||| Sbjct 27919 AACATCTGGAGAAAATAACGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAAATC 27860 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || | ||| | | |||| |||||||| || | ||| ||||| || || ||||| || Sbjct 27859 AGGCACCCATAATCCATAGAATAAATCCCTAGTTCTTTGCTCTTCATTACCATGATTTTT 27800 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | | | |||||| | |||||| ||||| ||||| || |||| ||| ||||| || Sbjct 27799 TCTCATATCTAAAATATCAAAGATATCGCCATGCCAAGGCTCTATATATATAGCGAATGC 27740 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 || | ||| || |||||||||||||| ||||||||||| | || || || | Sbjct 27739 CCCCGGCCGTTTACCACCACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGCGGAG 27680 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT----ATGAATCTTGGATCCTGTCG 26180 ||||||||| ||||| | || |||||||||||| |||||| || || | | Sbjct 27679 CATTGGAACCAATCCGGAAGACTTTCCGTTTGTGCTTGCGATGAAT----GACCCACTGG 27624 Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 | | |||||| ||| |||||| ||| || ||||| | ||| ||||| ||| | Sbjct 27623 AACGAATATCATGAACATGAACACCAATACCACCGGAGGCTTTCGAAATCAAAGCAGTCT 27564 Query 26241 C-TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 | |||| | || | | |||| || | || || ||||||| | | ||| |||||| Sbjct 27563 CGTGAAGC-GTTTTGTAAATCCCATCAATTGAGTCTTCTTTCATAGCAAGTAAGAAACAA 27505 Query 26300 GAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGA 26353 |||||||| | | | | |||||| ||| ||| || |||| |||||| Sbjct 27504 GAAGATAAGTAATTAAAATTACTTCCTGCATTGTATAGAGTTGGTGAGGCATGA 27451 Score = 82.4 bits (90), Expect = 4e-11 Identities = 125/175 (71%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 24972 TAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAA 25031 ||||| | |||| |||| | ||||||| |||||||| || |||||||||| | | Sbjct 28822 TAATTCTATCAA-ATCTTTGATCAAGTATTTATTTACGACTTGGTATTCTCCAGAAAGCA 28764 Query 25032 CTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGAT 25089 | | || ||| ||| || || || |||| || |||||||||||| || || || Sbjct 28763 CCCGTCGAGTATAAATA--TTCGAGGTATATGGCTCGAAACATTCATTAAAACCCAATAT 28706 Query 25090 TTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCA 25144 || || || || || ||||||||| ||| | ||| | ||||||||||| ||| Sbjct 28705 CTGCGATGTTGAAGCCGTTGGCATTGGTGCAACTAACAAAGAATTTCTCAATCCA 28651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034223808475