Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 311 4e-80
seq1180 156 2e-33
>seq1308
Length=6085
Score = 311 bits (344), Expect = 4e-80
Identities = 1009/1538 (66%), Gaps = 63/1538 (4%)
Strand=Plus/Plus
Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075
||||| |||| | ||||||||| | | ||||||||| |||||||||||||||||
Sbjct 3741 AATTCACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 3800
Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135
||||| || |||||||| || || || || |||||||| || | || || || |||
Sbjct 3801 TTATTACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTT 3860
Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAAC 25195
|| || |||| || | || | ||||||||| |||||||||| | | || |
Sbjct 3861 CTTAATCCATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCA----TAATTCAGT 3916
Query 25196 TCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGCAGGCGA---TTGA 25252
| | | || ||| |||||||| ||||||| || || | ||| || || ||||
Sbjct 3917 TGGTTTTC--TATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAACCTTGA 3974
Query 25253 TCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCA 25312
| | | |||| ||| ||||| | | || | || | || || | |||||
Sbjct 3975 TAAGA--TTGA-TATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCG 4031
Query 25313 TAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCA 25372
| || || |||||||||| | ||||| | |||| || ||| || |
Sbjct 4032 TGGTAAATGGTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGGT 4091
Query 25373 ATTTCCATTAAGGC--GAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGAT 25430
| | | | ||| | ||| | ||| || || || || || || || ||| ||| | ||
Sbjct 4092 AAT--CTTAAAGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTAT 4149
Query 25431 GTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTAT 25490
||| |||| | | | ||||| ||||| |||| ||| || || ||||
Sbjct 4150 TTTTCATATTTGAATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTAT 4209
Query 25491 CTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGC- 25549
|| ||| | ||| ||| || |||| || | | | | ||||||| | |
Sbjct 4210 TTAAATTACGAGTAACAATCTTGGTA-ATTT---CATGTAATTTA--TCAAAATTATACC 4263
Query 25550 -TTATCGTTTAT-ATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAA 25607
| | | | || |||| ||| ||||| | ||| |||||||| ||||||||||| |
Sbjct 4264 ATGAATGATCATCATCTTTTTCAACAAACGCTGGTAAGGCGATTGAAGCTAAATTACAGA 4323
Query 25608 CAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATACATAAGTTGCTAGATTTG 25666
|||| ||||| | || | ||||||||| || || ||||||||| |||||
Sbjct 4324 CAGCAACTTCTT-CAGGTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTA 4382
Query 25667 ATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATA 25725
|| | || ||||||||||||| | | ||| |||| |||||||||| | | |
Sbjct 4383 ATAATACCTAAATTCTTTTGATTGGTCTTTTCATT-ACAAGCATCTTTATATAACATAAA 4441
Query 25726 TGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTT--T 25783
||| || || |||||| |||| | | ||||||| | ||| | || | || || |
Sbjct 4442 TGGAGTACCAGTTTCAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAAT 4501
Query 25784 ACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGA 25843
| ||| | ||| | | ||| ||| || | |||| || | || ||||||||| |
Sbjct 4502 AGTTTGTCTACCACG--ACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCA 4559
Query 25844 TTTATTTTC-TCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAA 25902
|| | |||| || ||| ||| | || | || | |||||
Sbjct 4560 CC-ATAAACATCAGGTAAT------CCAG-------GAGCTTCAT--TAGGGGAAAATAA 4603
Query 25903 ATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATA 25962
||||||| ||||||| || || || |||||||||||| |||||||| | |||
Sbjct 4604 TGTCCAATCACCATTTTGTTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGG 4663
Query 25963 AAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATC 26022
||||||||||| ||||| ||||||||||| || ||||| ||| | | ||| | |||||
Sbjct 4664 GAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATC 4723
Query 26023 AAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCC 26082
|||||||||||| ||||||||||||||||||| |||||| |||| ||| || ||
Sbjct 4724 AAAAATATCTGAATGCCATGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACC 4783
Query 26083 ACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGT 26142
||||||||| || || | ||| || | |||||||| | ||| || | |||| | ||
Sbjct 4784 ACCTTGATCGACATAACGTGCGGTGTTGTTGAAAACACGTACCATGGGGA-TAATACCGT 4842
Query 26143 TGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAA 26201
|| || | || || || | | ||| | | || || || | ||||| ||| ||| |
Sbjct 4843 TGGAAGTACCATTAGTACCAGCAATATAAGCCCCAGTAGAACGAATATTATGAATATGTA 4902
Query 26202 TACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGAAACTGTATCGAAAAT 26259
||| || |||||||| | |||||||| |||||| | | ||| ||||| ||||
Sbjct 4903 AACCAATACCACCAGCACTCTTTGAAATCAATGCACATGTTTTCAAA--GTATCATAAAT 4960
Query 26260 TCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGT 26319
|| | || |||| ||||||| | | ||| ||||| || || | ||| | | |
Sbjct 4961 CCCATCAATTGAATCATCTTTCATGGCAACTAAGAAACATGACGACATTTGTGGACTTGG 5020
Query 26320 TGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAAAGC--T 26377
|| || | ||||||||| || |||| | ||||||| || | ||| | | | |
Sbjct 5021 GGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAA--CTTTTGTGACATCATA 5078
Query 26378 GTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAAC 26437
|||||| ||||| |||| | ||||| | | || |||| || ||| |
Sbjct 5079 TTATAAGATTCAATAACTCGAGGGATATCCCTACCATGAATACCAATTGCCACTCTCATG 5138
Query 26438 CACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTT 26497
| || ||| |||| |||| || ||| | | |||| | ||||||||| ||
Sbjct 5139 ATTAAATGTTGTGGTCTTTCAGCAACTTTA---CCATTAACTCTTAATAAATAAGATCTT 5195
Query 26498 TCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535
||||||||||| ||||||||||||| || |||||||||
Sbjct 5196 TCTAAAGTTTTAAATCCAAAATAATTATAATTGAAATC 5233
>seq1180
Length=50914
Score = 156 bits (172), Expect = 2e-33
Identities = 321/474 (68%), Gaps = 10/474 (2%)
Strand=Plus/Minus
Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944
|| || |||| | ||||| ||| || || | || | ||| | ||| ||||||||
Sbjct 27919 AACATCTGGAGAAAATAACGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAAATC 27860
Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004
|| | ||| | | |||| |||||||| || | ||| ||||| || || ||||| ||
Sbjct 27859 AGGCACCCATAATCCATAGAATAAATCCCTAGTTCTTTGCTCTTCATTACCATGATTTTT 27800
Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064
| | | |||||| | |||||| ||||| ||||| || |||| ||| ||||| ||
Sbjct 27799 TCTCATATCTAAAATATCAAAGATATCGCCATGCCAAGGCTCTATATATATAGCGAATGC 27740
Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124
|| | ||| || |||||||||||||| ||||||||||| | || || || |
Sbjct 27739 CCCCGGCCGTTTACCACCACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGCGGAG 27680
Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT----ATGAATCTTGGATCCTGTCG 26180
||||||||| ||||| | || |||||||||||| |||||| || || | |
Sbjct 27679 CATTGGAACCAATCCGGAAGACTTTCCGTTTGTGCTTGCGATGAAT----GACCCACTGG 27624
Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240
| | |||||| ||| |||||| ||| || ||||| | ||| ||||| ||| |
Sbjct 27623 AACGAATATCATGAACATGAACACCAATACCACCGGAGGCTTTCGAAATCAAAGCAGTCT 27564
Query 26241 C-TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299
| |||| | || | | |||| || | || || ||||||| | | ||| ||||||
Sbjct 27563 CGTGAAGC-GTTTTGTAAATCCCATCAATTGAGTCTTCTTTCATAGCAAGTAAGAAACAA 27505
Query 26300 GAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGA 26353
|||||||| | | | | |||||| ||| ||| || |||| ||||||
Sbjct 27504 GAAGATAAGTAATTAAAATTACTTCCTGCATTGTATAGAGTTGGTGAGGCATGA 27451
Score = 82.4 bits (90), Expect = 4e-11
Identities = 125/175 (71%), Gaps = 5/175 (3%)
Strand=Plus/Minus
Query 24972 TAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAA 25031
||||| | |||| |||| | ||||||| |||||||| || |||||||||| | |
Sbjct 28822 TAATTCTATCAA-ATCTTTGATCAAGTATTTATTTACGACTTGGTATTCTCCAGAAAGCA 28764
Query 25032 CTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGAT 25089
| | || ||| ||| || || || |||| || |||||||||||| || || ||
Sbjct 28763 CCCGTCGAGTATAAATA--TTCGAGGTATATGGCTCGAAACATTCATTAAAACCCAATAT 28706
Query 25090 TTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCA 25144
|| || || || || ||||||||| ||| | ||| | ||||||||||| |||
Sbjct 28705 CTGCGATGTTGAAGCCGTTGGCATTGGTGCAACTAACAAAGAATTTCTCAATCCA 28651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253034223808475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |