Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1308 226 3e-54 seq1399 93.3 5e-14 seq1180 82.4 9e-11 >seq1308 Length=6085 Score = 226 bits (250), Expect = 3e-54 Identities = 870/1349 (64%), Gaps = 37/1349 (3%) Strand=Plus/Minus Query 75289 GATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAG 75348 |||||| ||| | |||| ||| | ||||||| | || ||||| ||||| ||||| Sbjct 5075 GATGTCACAAAAGTTTTTCACTCATGGTTCACCAACTTTATTTAATGCCGGTACCCCAAG 5016 Query 75349 ACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTA 75408 || || ||||| || ||| | | |||| || || || ||||| | || || || Sbjct 5015 TCCACAAATGTCGTCATGTTTCTTAGTTGCCATGAAAGATGATTCAATTGATGGGATTTA 4956 Query 75409 TGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACAT 75468 || ||| | | ||||| || |||||| | ||||| |||||||| | || || Sbjct 4955 TGATACTTTGAAAACATGTGCATTGATTTCAAAGAGTGCTGGTGGTATTGGTTTACATAT 4896 Query 75469 CCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTAT 75528 ||| || | | | | | || |||| || || |||||| || | ||||| Sbjct 4895 TCATAATATTCGTTCTACTGGGGCTTATATTGCTGGTACTAATGGTACTTCCAACGGTAT 4836 Query 75529 TATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCG 75588 ||| || ||| | || || || ||| ||| || || ||||| |||||| || | Sbjct 4835 TATCCCCATGGTACGTGTTTTCAACAACACCGCACGTTATGTCGATCAAGGTGGTAATAA 4776 Query 75589 CA----AGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCC 75644 | ||| | | | || |||| || |||||||||||| | ||||| | || || Sbjct 4775 GAGACCAGGTG-CTTTTGCCCTCTATTTAGAACCATGGCATTCAGATATTTTTGATTTTA 4717 Query 75645 TTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCC 75704 |||| | || || |||||| | ||||| | | |||||| | || || | Sbjct 4716 TTGATATTAGAAAAAATCAAGGTAAAGAAGAAATTAGAGCCAGAGATTTATTCCCAGCAT 4657 Query 75705 TGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCT 75764 | |||||||| || | || |||||||| || || | |||| | ||| | | || | Sbjct 4656 TATGGATTCCTGATTTATTTATGAAGCGTGTGGAACAAAATGGTGATTGGACATTATTTT 4597 Query 75765 GTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACA 75824 || | | || || || | | || | ||||| || |||||| | || Sbjct 4596 CCCCTAATGAAGCTCCTGGATTACCTGATGTTTATGGTGAAGAATTTGAACAATTATATG 4537 Query 75825 CAAAGTATGAAGAGGAGGGTAG----AGCCAATGCGACTGTACCAGCCGCCGATGTT-TG 75879 ||| |||||| || ||| | || ||| ||| | || | | | || || Sbjct 4536 AAAAATATGAACGTGAAGGTCGTGGTAGACAA----ACTATTA-AGGCACAAAAATTATG 4482 Query 75880 GAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGC 75939 | | | ||| | || | || || || ||||| || |||| |||| | || || ||||| Sbjct 4481 GTATTCCATTTTAGAAGCCCAAACTGAAACTGGTACTCCATTTATGTTATATAAAGATGC 4422 Query 75940 TTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCAC 75999 |||||| | |||| || ||||||||||| || | || || || || | || Sbjct 4421 TTGTAATGAAAAGACCAATCAAAAGAATTTAGGTATTATTAAATCATCTAACTTATGTTG 4362 Query 76000 GGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 |||||| | || || || || || ||||| || ||||| || |||||||| Sbjct 4361 TGAAATTGTTGAATATTCATCACCTGAAGAAGTTGCTGTCTGTAATTTAGCTTCAATCGC 4302 Query 76060 CCTTCCAAAGTATGTCAATGAAGA-GACTCGCACTTTTG-----ATTATGAAAAACTTCA 76113 | | ||| || ||| | |||| || || | || ||| ||| ||| | || Sbjct 4301 CTTACCAGCGTTTGTTGAAAAAGATGATGATCATTCATGGTATAATTTTGATAAATTACA 4242 Query 76114 TGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCC 76173 |||||| || ||||||||||| ||| |||| ||| ||||| | |||| |||||| Sbjct 4241 TGAAATTACCAAGATTGTTACTCGTAATTTAAATAAAGTTATTGATCGTAATTATTATCC 4182 Query 76174 CGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 ||| ||| || ||| || |||||| | | ||||| |||| |||||| || |||| Sbjct 4181 TGTTCCAGAA-GCCAAAAATTCAAATATGAAAAATAGACCAATTGCTTTGGGGGTCCAAG 4123 Query 76233 GTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGG 76289 || | || |||| || || ||| | ||| |||||||||| | ||||||| | Sbjct 4122 GTTTGGCTGATGCTTTCATGGCTTTAAGAT--TAC-CATTTGATTCTCAAGAAGCCAGAG 4066 Query 76290 AGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAAT 76349 | | ||| || || ||||||||||| || ||||| | | || | | ||||| Sbjct 4065 AATTAAATATTCAAATTTTTGAAACCATTTACCACGCTGCTGTTGAAACTTCTATTGAAT 4006 Query 76350 TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGC 76409 | || ||| ||||| | ||| | | | | | ||||| || || ||||||||| | Sbjct 4005 TAGCCCAAGAAGAAGGTCCATATCAATCTTATCAAGGTTCACCAGCATCCCAAGGGTTAT 3946 Query 76410 TTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAA 76467 | || | |||| | ||| | | ||||||| || || || | | |||||| | | || Sbjct 3945 TACAATATGATTTATGGAATAGA-AAACCAA-CTGAATTATGGGATTGGGATACTTTAAA 3888 Query 76468 GGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACA 76525 || || ||| || | || | | ||| |||||| | || || |||||||| Sbjct 3887 ACAAAATATGGCAA--AGCATGGATTAAGAAACTCACTTTTGGTTGCTCCTATGCCAACT 3830 Query 76526 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATC 76585 || || || ||||||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 3829 GCTTCAACATCACAAATCTTGGGTAATAATGAATGTTTTGAACCATATACTTCAAACATT 3770 Query 76586 TACCTGAGAAGAACCCTCGCAGGTGAGTT 76614 || |||||| || || ||||| || Sbjct 3769 TATTCCAGAAGAGTTCTTGCTGGTGAATT 3741 >seq1399 Length=19921 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27873 TTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAAC 27932 |||||| || | || || ||| || ||||| || || || | ||||| || | || Sbjct 13029 TTGTGCAATTCTTTCACCAACCTTAACTTCAAAATCCTTTTCACTATGATTAAATAATAC 12970 Query 27933 GACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATG 27992 ||||| ||||||||| |||| || | ||||||||| || |||||| ||||||||| Sbjct 12969 AACTTTAACTTCACCTCTATAATCAGCATCAATAACTCCAGCACCAGTAGAAATACCATG 12910 Query 27993 CTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 ||| || || | || || || || |||||||| ||||| Sbjct 12909 CTTAACCGCCAATCCTGAACGAGGGGCAACACGGCCATA 12871 >seq1180 Length=50914 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 |||| |||||| | |||| || || |||||||| ||||||||||||||||||||| Sbjct 28022 TGGATGGCTATATTAGAATCCCAAACCGAGACTGGTGGCCCATATATGCTTTACAAGGAT 28081 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 |||||||| | || || |||||||||||||| Sbjct 28082 GCTTGTAATGAAAAATCAAATCAAAAGAATTTGGG 28116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555632814240