Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1530 161 2e-34 seq1705 150 3e-31 >seq1530 Length=119309 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | || | ||| || |||| || || || || Sbjct 25124 AATTTGCATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTT 25183 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| |||||| ||| ||||||||||| || |||||||| || | ||||| Sbjct 25184 GTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25243 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| |||||||| ||||| | || | ||| |||||| || || Sbjct 25244 ATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGA 25303 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| |||||||| | || || || ||||| |||| || || || || |||||||| Sbjct 25304 AGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | || | ||| || |||| || || || || Sbjct 24896 AATTTGCATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTT 24955 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| |||||| || ||||||||||| || |||||||| || | ||||| Sbjct 24956 GTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25015 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| |||||||| ||||| | || | ||| |||||| || || Sbjct 25016 ATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGA 25075 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| |||||||| | || || || ||||| |||| || || || || |||||||| Sbjct 25076 AGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 158 bits (174), Expect = 2e-33 Identities = 191/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| | || | ||| || |||| || || || || Sbjct 25352 AATTTGCATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTT 25411 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| |||||| || ||||||||||| || |||||||| || | ||||| Sbjct 25412 GTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25471 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| |||||||| ||||| | || | || ||||| ||||| Sbjct 25472 ATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGA 25531 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT-T 193362 ||| || ||||||| || ||||| ||||| |||| || || || || ||||||||| | Sbjct 25532 AGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGT 25591 Query 193363 TA--TTAGTAAAATAATT 193378 || |||| | |||||| Sbjct 25592 TAATGTAGTTATATAATT 25609 Score = 143 bits (158), Expect = 5e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 |||| ||||||||| |||| | || | ||| || |||| || || || || || Sbjct 24671 TTATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 24730 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| ||||| |||||| ||| ||||||||||| || || ||||| || | |||||||| Sbjct 24731 GTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATC 24790 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || ||||| |||||||| ||||| | || | ||| |||||| || ||||| Sbjct 24791 TGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGA 24850 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | || || || ||||| |||| || || || || |||||||| Sbjct 24851 TTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 >seq1705 Length=31738 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| |||| | || | || || |||| || || || || ||||| || Sbjct 13724 ACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 13665 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| |||||| ||| |||||||| || || || || |||||||| ||||| ||||| || Sbjct 13664 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGG 13605 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || |||| ||| | ||| ||| || || ||||| ||||| Sbjct 13604 AATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAAC 13545 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| ||||| |||| || || || || ||||||||||| Sbjct 13544 TTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899633336841360