Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 161 2e-34
seq1705 150 3e-31
>seq1530
Length=119309
Score = 161 bits (178), Expect = 2e-34
Identities = 178/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||||||||||| | || | ||| || |||| || || || ||
Sbjct 25124 AATTTGCATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTT 25183
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| ||||| |||||| ||| ||||||||||| || |||||||| || | |||||
Sbjct 25184 GTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25243
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| || ||||| |||||||| ||||| | || | ||| |||||| || ||
Sbjct 25244 ATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGA 25303
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| |||||||| | || || || ||||| |||| || || || || ||||||||
Sbjct 25304 AGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 158 bits (174), Expect = 2e-33
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||||||||||| | || | ||| || |||| || || || ||
Sbjct 24896 AATTTGCATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTT 24955
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||||||||| |||||| || ||||||||||| || |||||||| || | |||||
Sbjct 24956 GTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25015
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || || ||||| |||||||| ||||| | || | ||| |||||| || ||
Sbjct 25016 ATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGA 25075
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| |||||||| | || || || ||||| |||| || || || || ||||||||
Sbjct 25076 AGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Score = 158 bits (174), Expect = 2e-33
Identities = 191/258 (74%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| ||||||||||| |||| | || | ||| || |||| || || || ||
Sbjct 25352 AATTTGCATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTT 25411
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||||||||| |||||| || ||||||||||| || |||||||| || | |||||
Sbjct 25412 GTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTG 25471
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || || ||||| |||||||| ||||| | || | || ||||| |||||
Sbjct 25472 ATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGA 25531
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT-T 193362
||| || ||||||| || ||||| ||||| |||| || || || || ||||||||| |
Sbjct 25532 AGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGT 25591
Query 193363 TA--TTAGTAAAATAATT 193378
|| |||| | ||||||
Sbjct 25592 TAATGTAGTTATATAATT 25609
Score = 143 bits (158), Expect = 5e-29
Identities = 172/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
|||| ||||||||| |||| | || | ||| || |||| || || || || ||
Sbjct 24671 TTATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 24730
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||| ||||| |||||| ||| ||||||||||| || || ||||| || | ||||||||
Sbjct 24731 GTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATC 24790
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
|| || || ||||| |||||||| ||||| | || | ||| |||||| || |||||
Sbjct 24791 TGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGA 24850
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| | || || || ||||| |||| || || || || ||||||||
Sbjct 24851 TTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
>seq1705
Length=31738
Score = 150 bits (166), Expect = 3e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
||||||||| |||| | || | || || |||| || || || || ||||| ||
Sbjct 13724 ACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 13665
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
||| |||||| ||| |||||||| || || || || |||||||| ||||| ||||| ||
Sbjct 13664 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGG 13605
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || ||||| || |||| ||| | ||| ||| || || ||||| |||||
Sbjct 13604 AATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAAC 13545
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || ||||| ||||| |||| || || || || |||||||||||
Sbjct 13544 TTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899633336841360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |