Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1387 320 2e-82 seq1530 150 3e-31 seq1705 141 1e-28 >seq1387 Length=15432 Score = 320 bits (354), Expect = 2e-82 Identities = 532/763 (70%), Gaps = 20/763 (3%) Strand=Plus/Plus Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||||||||| || || |||||||| |||||||| ||||||| | || |||||||||| Sbjct 2318 TAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAA 2377 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || | |||| |||||| | | | ||||||| || || ||||||| || || Sbjct 2378 TAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAAT 2437 Query 18100 TATGTTTATTACC----CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATA 18155 || ||| || || ||| | | | ||| | || || | | |||||| Sbjct 2438 AATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAA-------ATGAGCAAATAATA 2490 Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215 |||| ||||||||||| ||||| ||||||||||| | |||||||| || || |||| Sbjct 2491 AACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTA 2550 Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGA 18275 | || ||||||| |||||||| |||| ||| || || || || || | | ||||| Sbjct 2551 AACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGA 2610 Query 18276 ATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 | ||||| ||||| ||| || || || | ||||||||||||| | | || | | || Sbjct 2611 AAATACCTTCAACAGCA-GCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTA-TC 2668 Query 18335 AGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 ||| |||||| || |||||| || ||| ||||| || ||| || ||||| Sbjct 2669 AGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGC 2728 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 |||||| || | ||| ||| || | |||||| |||||||| || ||||| | ||||| Sbjct 2729 ATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATA 2788 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||| || |||| || || ||||| | ||| || ||| |||| || || Sbjct 2789 AGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGG 2848 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| || ||| ||||| |||| | ||||| |||||||| ||||| |||| | Sbjct 2849 AATTTGAACTTCTGCTGAAAAAT-TTTCAATTAAATTTTCATTAACAATACCATCAGATG 2907 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGT--- 18629 || || ||||| || || | |||||||| | |||||| ||| || | || | Sbjct 2908 CAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTC 2967 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 |||| |||| || ||| || || ||||| |||||| | |||||||| |||| ||| | Sbjct 2968 TCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTG 3027 Query 18690 CCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 | | ||||| | || |||| || | || | || ||||| Sbjct 3028 CTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAA 3070 >seq1530 Length=119309 Score = 150 bits (166), Expect = 3e-31 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || || || || || |||||||| |||||||| ||| ||| Sbjct 25589 AATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCTTC 25530 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || |||||| |||||||| ||||| || || ||||| || Sbjct 25529 CGACACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCA 25470 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||||| ||| ||||| || | ||||| ||||||||||| || || || Sbjct 25469 ACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTACAA 25410 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || | ||||||||||||||||||||||| ||| Sbjct 25409 CAT--CCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGGT 25361 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || || || || || || || || ||||| ||| |||| Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || |||||| |||||||| ||||| || || ||||| ||| Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 24785 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || ||||| || | |||||| ||||| ||||| || || || Sbjct 24784 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAAC 24725 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || | |||||||| || ||||||||||| ||| Sbjct 24724 AT--CCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 24677 >seq1705 Length=31738 Score = 141 bits (156), Expect = 1e-28 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || |||||||| |||||||| ||| | Sbjct 13494 AAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCT 13553 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| || || ||| || || ||||| || ||||| || || || || Sbjct 13554 TCTGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 13613 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | || |||||||| | |||||| ||||||||||| || || Sbjct 13614 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 13673 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || ||||| |||||||||||||| |||| Sbjct 13674 A--ACATCCAAAAGGAATCTACCTTACACTTAGTCTTAAGATTAAGAGGTGGTG 13725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854865046800