Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 356 4e-93
seq1530 178 2e-39
seq1705 161 2e-34
>seq1387
Length=15432
Score = 356 bits (394), Expect = 4e-93
Identities = 606/885 (68%), Gaps = 14/885 (2%)
Strand=Plus/Plus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
||||| || ||||||||| | ||||| |||||||| ||||| || ||||||| ||
Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAA 38950
| |||||| ||||||||||||| ||||||| || | | || ||| | || |||
Sbjct 2262 TCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCT-TATTACCAAATGCAACTAA 2320
Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010
|||||| ||||| ||||||||||||||||| |||| |||| ||| |||||||| |||||
Sbjct 2321 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAA 2380
Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070
||| ||||||||||||| | | |||||||||| || || ||||||| ||| ||
Sbjct 2381 ACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAAT 2440
Query 39071 cataattatattattttttgataatttatatt--taatatgattcgcatataGTAAACAT 39128
| | || | |||| | ||| | |||| | | |||| ||| ||| ||||||
Sbjct 2441 CTT--TTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGA---GCAAATAATAAACAA 2495
Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188
|||||||| |||||||| ||||| || ||| | || |||||||| |||||||| |||
Sbjct 2496 GCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCT 2555
Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248
|||||||| ||||| || || | ||| || ||||| ||||| | | |||||| |||
Sbjct 2556 GGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATA 2615
Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308
|| || ||| |||||||| | || |||| | || | | | || | ||| |||
Sbjct 2616 CCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTATCAGTGATC 2675
Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368
|| ||| |||||||| |||||| || ||||| |||| |||| ||| ||||| ||||||
Sbjct 2676 CATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCATTAAAT 2735
Query 39369 AATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCA 39428
|| | || ||||| |||||
Sbjct 2736 AAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCA 2795
Query 39429 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGA 39488
||||| | | ||| || |||||||| ||| ||| | ||||||| | |||
Sbjct 2796 GAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGA 2855
Query 39489 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 39548
||||| | | || ||||| |||||| ||| ||||||||||||||||| || |||
Sbjct 2856 ACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAG 2915
Query 39549 AATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CCAAGAT 39605
|||||||| || | ||| |||| | |||||| ||| || || || || ||||
Sbjct 2916 AATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAATCA 2975
Query 39606 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTA 39665
| | ||| || |||||| | |||||| |||||||| |||||| | | ||| ||
Sbjct 2976 TGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTG 3035
Query 39666 TACATTTGATATATATCAAAATGTTCAATGGGAA--ATAACACAT 39708
|| | ||| | || ||| || | ||| |||| |||||| ||
Sbjct 3036 TAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAAT 3080
>seq1530
Length=119309
Score = 178 bits (196), Expect = 2e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || ||| |||||||||||||||| || || || || || ||
Sbjct 25359 ATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 25418
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||||| || |||| || |||||||||||||||||||| || | ||||| || |||
Sbjct 25419 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25478
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| |||||||| |||||| || || ||| ||||| || || ||||||
Sbjct 25479 GGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCT 25538
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||||| ||||| || ||||| ||||| || || | ||| || ||||||
Sbjct 25539 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATT 25589
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || ||| |||||||||||||||| || || || || || ||
Sbjct 24903 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 24962
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || |||| || |||||||||||||||||||| || | ||||| || |||
Sbjct 24963 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25022
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| |||||||| |||||| || ||||| ||||| || || |||||
Sbjct 25023 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25082
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | |||||||| ||||||||||| || || | ||| || |||||
Sbjct 25083 ACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || || |||||||||||||||| || || || || || ||
Sbjct 25131 ATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 25190
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || || |||||||||||||||||||| || | ||||| || ||
Sbjct 25191 GATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 25250
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| |||||||| |||||| || ||||| ||||| || || |||||
Sbjct 25251 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25310
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || ||||| ||||| ||||| || |||| ||| || |||||
Sbjct 25311 ACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
||||||||| | || || |||||||||||||||| || || || || || || ||
Sbjct 24677 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 24736
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
||| | || | || || |||||||||||||| ||||| || | ||||| || |||||
Sbjct 24737 TAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 24796
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
|| ||||| |||||||| |||||| || ||||| ||||| || || ||||| ||
Sbjct 24797 GATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 24856
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||| | || ||||| ||||| ||||| || || | ||| || |||||
Sbjct 24857 TTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
>seq1705
Length=31738
Score = 161 bits (178), Expect = 2e-34
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || ||| ||||| ||||| |||| || || || ||
Sbjct 13732 TTCTTACCACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTG 13673
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || ||||||| || | || || ||||| |||||||| || |||||||| ||||||
Sbjct 13672 TAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGG 13613
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|||||||| || ||||| || ||||| || || ||| ||||| || || || ||
Sbjct 13612 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAA 13553
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| ||||||| ||||| || ||||||||||| || || | ||| || ||||||||
Sbjct 13552 GATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905114808503400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |