Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1387 356 4e-93 seq1530 178 2e-39 seq1705 161 2e-34 >seq1387 Length=15432 Score = 356 bits (394), Expect = 4e-93 Identities = 606/885 (68%), Gaps = 14/885 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || ||||||||| | ||||| |||||||| ||||| || ||||||| || Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAA 38950 | |||||| ||||||||||||| ||||||| || | | || ||| | || ||| Sbjct 2262 TCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCT-TATTACCAAATGCAACTAA 2320 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||| ||||| ||||||||||||||||| |||| |||| ||| |||||||| ||||| Sbjct 2321 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAA 2380 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 ||| ||||||||||||| | | |||||||||| || || ||||||| ||| || Sbjct 2381 ACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAAT 2440 Query 39071 cataattatattattttttgataatttatatt--taatatgattcgcatataGTAAACAT 39128 | | || | |||| | ||| | |||| | | |||| ||| ||| |||||| Sbjct 2441 CTT--TTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGA---GCAAATAATAAACAA 2495 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| |||||||| ||||| || ||| | || |||||||| |||||||| ||| Sbjct 2496 GCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCT 2555 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 |||||||| ||||| || || | ||| || ||||| ||||| | | |||||| ||| Sbjct 2556 GGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATA 2615 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||| |||||||| | || |||| | || | | | || | ||| ||| Sbjct 2616 CCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTATCAGTGATC 2675 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || ||| |||||||| |||||| || ||||| |||| |||| ||| ||||| |||||| Sbjct 2676 CATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCATTAAAT 2735 Query 39369 AATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCA 39428 || | || ||||| ||||| Sbjct 2736 AAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCA 2795 Query 39429 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGA 39488 ||||| | | ||| || |||||||| ||| ||| | ||||||| | ||| Sbjct 2796 GAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGA 2855 Query 39489 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 39548 ||||| | | || ||||| |||||| ||| ||||||||||||||||| || ||| Sbjct 2856 ACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAG 2915 Query 39549 AATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CCAAGAT 39605 |||||||| || | ||| |||| | |||||| ||| || || || || |||| Sbjct 2916 AATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAATCA 2975 Query 39606 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTA 39665 | | ||| || |||||| | |||||| |||||||| |||||| | | ||| || Sbjct 2976 TGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTG 3035 Query 39666 TACATTTGATATATATCAAAATGTTCAATGGGAA--ATAACACAT 39708 || | ||| | || ||| || | ||| |||| |||||| || Sbjct 3036 TAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAAT 3080 >seq1530 Length=119309 Score = 178 bits (196), Expect = 2e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| |||||||||||||||| || || || || || || Sbjct 25359 ATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 25418 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || |||| || |||||||||||||||||||| || | ||||| || ||| Sbjct 25419 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25478 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || || ||| ||||| || || |||||| Sbjct 25479 GGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCT 25538 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| ||||| || ||||| ||||| || || | ||| || |||||| Sbjct 25539 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATT 25589 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| |||||||||||||||| || || || || || || Sbjct 24903 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 24962 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| || |||||||||||||||||||| || | ||||| || ||| Sbjct 24963 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25022 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| ||||| || || ||||| Sbjct 25023 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25082 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||||| ||||||||||| || || | ||| || ||||| Sbjct 25083 ACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || |||||||||||||||| || || || || || || Sbjct 25131 ATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 25190 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||||||||||||||| || | ||||| || || Sbjct 25191 GATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 25250 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| ||||| || || ||||| Sbjct 25251 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25310 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| ||||| ||||| || |||| ||| || ||||| Sbjct 25311 ACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || |||||||||||||||| || || || || || || || Sbjct 24677 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 24736 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || || |||||||||||||| ||||| || | ||||| || ||||| Sbjct 24737 TAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 24796 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| |||||||| |||||| || ||||| ||||| || || ||||| || Sbjct 24797 GATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 24856 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | || ||||| ||||| ||||| || || | ||| || ||||| Sbjct 24857 TTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 >seq1705 Length=31738 Score = 161 bits (178), Expect = 2e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| ||||| ||||| |||| || || || || Sbjct 13732 TTCTTACCACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTG 13673 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||||| || | || || ||||| |||||||| || |||||||| |||||| Sbjct 13672 TAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGG 13613 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || ||| ||||| || || || || Sbjct 13612 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAA 13553 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||| ||||| || ||||||||||| || || | ||| || |||||||| Sbjct 13552 GATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905114808503400