Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1308 150 5e-31 seq1387 125 2e-23 seq1840 109 2e-18 seq1755 95.1 4e-14 >seq1308 Length=6085 Score = 150 bits (166), Expect = 5e-31 Identities = 479/736 (65%), Gaps = 19/736 (3%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| ||||| || | |||||| || || | ||||||||||| || || Sbjct 4347 TATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCTTTTGATTG 4406 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 | || ||||||||||| || |||| || |||| || || || || | || || Sbjct 4407 GTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGGGCT 4466 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCGA 155809 || | ||| ||| | | | || ||||| | |||| | | ||||| Sbjct 4467 TCTAAAATGGAATACCATAATTTTTGTGCCTTAATA-GTTTGTCTACCACGACCTTCACG 4525 Query 155810 CTCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||||| |||||| | |||| | || ||||| ||| |||| | |||||| Sbjct 4526 TTCATATTTTTCATATA-ATTGTTCAA-ATTCTTCACCATAAACATCAGGTAATCCAGGA 4583 Query 155868 CACTTATCGGGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAA 155922 | || ||| |||| | | |||| ||||| || | ||||||| ||||| Sbjct 4584 GCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCC-----ACACGCTTCATAA 4638 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 ||| |||| ||| | || ||| | || || || | || || | || | Sbjct 4639 ATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTT 4698 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 |||| || | | || | || || |||||| | ||| ||| || | ||| | | Sbjct 4699 GATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGAGGG 4758 Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 ||||| ||| ||||| ||||| ||||| ||||| || || || || ||||| | Sbjct 4759 CAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTTGTTGAAAA 4818 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| || ||| || |||||||| |||||||| ||||| || || ||||| | |||| Sbjct 4819 CACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCCCAG 4878 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 || |||| |||||||||||||| ||||||||||| | | || ||||| || | Sbjct 4879 TAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATGCAC 4938 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 || || | ||||| |||| || ||||| |||||||||| ||| | | || | | Sbjct 4939 ATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGAAAC 4998 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||| || | ||| || || || || |||| || |||| ||||| | | Sbjct 4999 ATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGA 5058 Query 156340 AATACTTATTAGACAT 156355 || |||| | ||||| Sbjct 5059 AAAACTTTTGTGACAT 5074 >seq1387 Length=15432 Score = 125 bits (138), Expect = 2e-23 Identities = 286/421 (68%), Gaps = 21/421 (5%) Strand=Plus/Minus Query 133072 TAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGC 133130 ||| ||||||||||| ||||||| | | || |||||||| | || || ||| ||| Sbjct 3083 TAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAG- 3025 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 ||| | |||||||||| | ||| | |||||| || || | | ||| || Sbjct 3024 AAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGATTGGAGAG 2965 Query 133191 CCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGA 133247 | | || ||||||| | |||| ||||| | | ||||| || |||||||| Sbjct 2964 ATAAATTGAATGATGATGAAAGATATTTCATTTCAAGAGTCTTAGCATTCTTTGCTGCAT 2905 Query 133248 GTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGC 133305 ||||||||||||| |||||||||| ||| | || | | |||||||||| | | Sbjct 2904 CTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCA--GCAGAAGTTCAAATTCC 2847 Query 133306 CGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATA 133365 ||||| | || |||||| | || ||| ||| |||||||| |||||| || || Sbjct 2846 AGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGAAACTTA 2787 Query 133366 TTCTACTCTAATTGATACTTACATCAAAGATACCGTCCA---GAAGC--ACAAACTATTC 133420 ||| | ||||||||||||| || ||||| |||| ||||| | | |||| Sbjct 2786 TTCCCTTTTAATTGATACTTATATTAAAGA-----TCCAAAGGAAGCTGATTACTTATTT 2732 Query 133421 AACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAA-ATGGAT 133479 || || ||| | |||||||||| | || ||| |||| ||||| ||||| |||||| Sbjct 2731 AATGCTATTGAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGC-ATTAAGATGGAT 2673 Query 133480 C 133480 | Sbjct 2672 C 2672 >seq1840 Length=120634 Score = 109 bits (120), Expect = 2e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| || ||||||| | ||| | ||||||||| || ||||||||||| Sbjct 101330 ATCATAATGAACCATGATATCTTCCAAAGCCTTAACTAAACGACGTTGGATATAACCAGT 101271 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||| ||||| |||||||| ||||| | | |||| ||||||||||||| || Sbjct 101270 TTCAGCGGTTTTAACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 101211 Query 302673 TAGCTCTT 302680 | ||||| Sbjct 101210 GAACTCTT 101203 Score = 100 bits (110), Expect = 8e-16 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826 |||||||| ||| | | |||| |||| | || | | | | |||||||| | || Sbjct 102134 TAAATAAACAGTTAATGCTGGAGTCTTGATATTCTTGGCAACATTAAGAATTTCCTTAAG 102075 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||| |||||||| || || || |||||| | |||||| ||| | ||||||||||| Sbjct 102074 ACGAGGAACACCCAAAGTAACATT---CTTGGAAGAAACACCGGCATAATGGAAAGTATT 102018 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 | ||| | |||||||| ||| |||||||| ||| || |||| | |||||||||||| Sbjct 102017 TAAAGTCATTTGAGTAGCTGGTTCACCAATGGATTGGGCAGCAACAACACCAACCATTTC 101958 Query 301947 TCCTGG 301952 || || Sbjct 101957 ACCGGG 101952 >seq1755 Length=56564 Score = 95.1 bits (104), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 60203 CCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACA 60262 || ||||||| |||| ||| || ||||| ||||| ||||| |||||||| ||||||| | Sbjct 37889 CCATTTGGCTTTAATATATTGATATTGTTGGAGCCGACGAAGTTTTGAGCAAGACCAATA 37948 Query 60263 ATAGCACCATTTAA--ACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATC 60320 || | | | || | || |||||| ||||||||||||| || ||| || ||||| | Sbjct 37949 ATTGTTTGAATCAACGATTG--TTCACCATGATGATATCCAGTATTTTCAGATACATAAC 38006 Query 60321 CACTGAATTGTGCGACTTTAATTTC 60345 | ||||| || ||||| ||||| Sbjct 38007 CTGCCAATTGGGCTACTTTGATTTC 38031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471782279597201