Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 150 5e-31
seq1387 125 2e-23
seq1840 109 2e-18
seq1755 95.1 4e-14
>seq1308
Length=6085
Score = 150 bits (166), Expect = 5e-31
Identities = 479/736 (65%), Gaps = 19/736 (3%)
Strand=Plus/Plus
Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690
||||| ||||| ||||| || | |||||| || || | ||||||||||| || ||
Sbjct 4347 TATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCTTTTGATTG 4406
Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750
| || ||||||||||| || |||| || |||| || || || || | || ||
Sbjct 4407 GTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGGGCT 4466
Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCGA 155809
|| | ||| ||| | | | || ||||| | |||| | | |||||
Sbjct 4467 TCTAAAATGGAATACCATAATTTTTGTGCCTTAATA-GTTTGTCTACCACGACCTTCACG 4525
Query 155810 CTCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||||| |||||| | |||| | || ||||| ||| |||| | ||||||
Sbjct 4526 TTCATATTTTTCATATA-ATTGTTCAA-ATTCTTCACCATAAACATCAGGTAATCCAGGA 4583
Query 155868 CACTTATCGGGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAA 155922
| || ||| |||| | | |||| ||||| || | ||||||| |||||
Sbjct 4584 GCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCC-----ACACGCTTCATAA 4638
Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982
||| |||| ||| | || ||| | || || || | || || | || |
Sbjct 4639 ATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTT 4698
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
|||| || | | || | || || |||||| | ||| ||| || | ||| | |
Sbjct 4699 GATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGAGGG 4758
Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
||||| ||| ||||| ||||| ||||| ||||| || || || || ||||| |
Sbjct 4759 CAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTTGTTGAAAA 4818
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| || ||| || |||||||| |||||||| ||||| || || ||||| | ||||
Sbjct 4819 CACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCCCAG 4878
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
|| |||| |||||||||||||| ||||||||||| | | || ||||| || |
Sbjct 4879 TAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATGCAC 4938
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
|| || | ||||| |||| || ||||| |||||||||| ||| | | || | |
Sbjct 4939 ATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGAAAC 4998
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | ||| || | ||| || || || || |||| || |||| ||||| | |
Sbjct 4999 ATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGA 5058
Query 156340 AATACTTATTAGACAT 156355
|| |||| | |||||
Sbjct 5059 AAAACTTTTGTGACAT 5074
>seq1387
Length=15432
Score = 125 bits (138), Expect = 2e-23
Identities = 286/421 (68%), Gaps = 21/421 (5%)
Strand=Plus/Minus
Query 133072 TAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGC 133130
||| ||||||||||| ||||||| | | || |||||||| | || || ||| |||
Sbjct 3083 TAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAG- 3025
Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190
||| | |||||||||| | ||| | |||||| || || | | ||| ||
Sbjct 3024 AAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGATTGGAGAG 2965
Query 133191 CCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGA 133247
| | || ||||||| | |||| ||||| | | ||||| || ||||||||
Sbjct 2964 ATAAATTGAATGATGATGAAAGATATTTCATTTCAAGAGTCTTAGCATTCTTTGCTGCAT 2905
Query 133248 GTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGC 133305
||||||||||||| |||||||||| ||| | || | | |||||||||| | |
Sbjct 2904 CTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCA--GCAGAAGTTCAAATTCC 2847
Query 133306 CGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATA 133365
||||| | || |||||| | || ||| ||| |||||||| |||||| || ||
Sbjct 2846 AGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGAAACTTA 2787
Query 133366 TTCTACTCTAATTGATACTTACATCAAAGATACCGTCCA---GAAGC--ACAAACTATTC 133420
||| | ||||||||||||| || ||||| |||| ||||| | | ||||
Sbjct 2786 TTCCCTTTTAATTGATACTTATATTAAAGA-----TCCAAAGGAAGCTGATTACTTATTT 2732
Query 133421 AACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAA-ATGGAT 133479
|| || ||| | |||||||||| | || ||| |||| ||||| ||||| ||||||
Sbjct 2731 AATGCTATTGAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGC-ATTAAGATGGAT 2673
Query 133480 C 133480
|
Sbjct 2672 C 2672
>seq1840
Length=120634
Score = 109 bits (120), Expect = 2e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
||||||| || ||| || ||||||| | ||| | ||||||||| || |||||||||||
Sbjct 101330 ATCATAATGAACCATGATATCTTCCAAAGCCTTAACTAAACGACGTTGGATATAACCAGT 101271
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| || ||||| ||||| |||||||| ||||| | | |||| ||||||||||||| ||
Sbjct 101270 TTCAGCGGTTTTAACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 101211
Query 302673 TAGCTCTT 302680
| |||||
Sbjct 101210 GAACTCTT 101203
Score = 100 bits (110), Expect = 8e-16
Identities = 134/186 (72%), Gaps = 3/186 (2%)
Strand=Plus/Minus
Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826
|||||||| ||| | | |||| |||| | || | | | | |||||||| | ||
Sbjct 102134 TAAATAAACAGTTAATGCTGGAGTCTTGATATTCTTGGCAACATTAAGAATTTCCTTAAG 102075
Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886
||| |||||||| || || || |||||| | |||||| ||| | |||||||||||
Sbjct 102074 ACGAGGAACACCCAAAGTAACATT---CTTGGAAGAAACACCGGCATAATGGAAAGTATT 102018
Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946
| ||| | |||||||| ||| |||||||| ||| || |||| | ||||||||||||
Sbjct 102017 TAAAGTCATTTGAGTAGCTGGTTCACCAATGGATTGGGCAGCAACAACACCAACCATTTC 101958
Query 301947 TCCTGG 301952
|| ||
Sbjct 101957 ACCGGG 101952
>seq1755
Length=56564
Score = 95.1 bits (104), Expect = 4e-14
Identities = 109/145 (75%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 60203 CCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACA 60262
|| ||||||| |||| ||| || ||||| ||||| ||||| |||||||| ||||||| |
Sbjct 37889 CCATTTGGCTTTAATATATTGATATTGTTGGAGCCGACGAAGTTTTGAGCAAGACCAATA 37948
Query 60263 ATAGCACCATTTAA--ACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATC 60320
|| | | | || | || |||||| ||||||||||||| || ||| || ||||| |
Sbjct 37949 ATTGTTTGAATCAACGATTG--TTCACCATGATGATATCCAGTATTTTCAGATACATAAC 38006
Query 60321 CACTGAATTGTGCGACTTTAATTTC 60345
| ||||| || ||||| |||||
Sbjct 38007 CTGCCAATTGGGCTACTTTGATTTC 38031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471782279597201
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |