Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1163 141 1e-28 seq1180 89.7 7e-13 >seq1163 Length=41016 Score = 141 bits (156), Expect = 1e-28 Identities = 231/330 (70%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 168549 GGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGT 168608 ||||| |||||| | || |||| ||| | |||||| || ||||| | | ||||||| Sbjct 8164 GGTTCGACTGATGCCAAGTTGTTAAGTGAAAAAGGTGTCAAGATTTGGGAAGGTAATGGT 8105 Query 168609 TCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCA 168668 |||||||||| ||| || | || || || || | |||||||||||||||||| Sbjct 8104 TCTCGTGAATATTTGGACAATTTGGGATTAACTGATCGTCGAGAAGGTGATTTAGGTCCG 8045 Query 168669 ATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTAC 168728 ||||||| || |||||||||||| |||||| | |||| || |||||||| ||||| Sbjct 8044 GTTTATGGGTTCCAATGGAGACATTTTGGAGCTGAGTATAAAGATTGTGATACTGATTAT 7985 Query 168729 ACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAA 168788 || || |||||| ||||||||| | ||||| | ||| | | ||||| | Sbjct 7984 ACTGGTCAAGGATATGACCAATTACACGACGTGATAAAAAAATTAAAGACAAATCCATAT 7925 Query 168789 AATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCC 168848 |||||||||| | || | |||| || || | ||| || |||| |||||| Sbjct 7924 GATAGAAGAATTATTATGTCTGCTTGGAATCCGCCTGATTTTGCAAAGATGGCTCTTCCA 7865 Query 168849 CCTTGTCA-CACTTTAGTGCAATTTTATGT 168877 || ||||| ||| || ||||| ||||| Sbjct 7864 CCATGTCATGTCTTCTGT-CAATTCTATGT 7836 >seq1180 Length=50914 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 ||||| | || || | ||| ||||| | || ||||||||| ||||||||||||| Sbjct 34408 ATTTTCTTTGGACCGATTTACTATCAAAAATTGAAGCATATGGTTTTGGATAAAATGCAT 34467 Query 193854 GCTAGA---AGTCATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCT 193910 || ||| || | || |||| | | |||| ||||||||| ||| | || Sbjct 34468 GCAAGAGCAAG--AGGGCCAAGAG-CAGTTTTAACCAGACAACCAACCGAAGGTAGATCA 34524 Query 193911 CAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCT 193970 || ||| ||||| ||||| ||||||||||| | ||| ||| || ||| ||||||| Sbjct 34525 AGAGATGGTGGTTTGAGATTGGGAGAAATGGAAAGAGATTGTGTTATAGCATATGGTGCC 34584 Query 193971 ACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGC 194030 ||||||| || |||||| | | | | |||||| | ||| |||| ||| |||| Sbjct 34585 TCTCAATTGTTATTGGAAAGATTAATGATATCATCTGATGCATTTGAAGTTGATATTTGT 34644 Query 194031 ACAGAATGTGG 194041 | ||||||| Sbjct 34645 AATAAATGTGG 34655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635162728904440