Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1163 131 2e-25 seq1180 84.2 3e-11 >seq1163 Length=41016 Score = 131 bits (144), Expect = 2e-25 Identities = 223/318 (70%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 180464 AATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTA 180523 || ||||||| ||| | ||||| || | ||| | | ||||||||| ||| | | ||| Sbjct 8149 AAGTTGTTAAGTGAAAAAGGTGTCAAGATTTGGGAAGGTAATGGTTCTCGTGAATATTTG 8090 Query 180524 GATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAA 180583 || || ||||| | ||| ||||||||||||||| || ||||||| || ||| Sbjct 8089 GACAATTTGGGATTAACTGATCGTCGAGAAGGTGATTTAGGTCCGGTTTATGGGTTCCAA 8030 Query 180584 TGGAGACATGCAGGAGCTCAATATATTGACTGTGATACCAACTATATCGGGCAAGGTATA 180643 ||||||||| |||||| | |||| || |||||||| | |||| || ||||| ||| Sbjct 8029 TGGAGACATTTTGGAGCTGAGTATAAAGATTGTGATACTGATTATACTGGTCAAGG-ATA 7971 Query 180644 -GACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAAT 180702 ||||||||| | | || ||| ||| |||| | ||||| | ||||||| || Sbjct 7970 TGACCAATTACACGACGTGATAAAAAAATTAAAGACAAATCCATATGATAGAAGAATTAT 7911 Query 180703 CATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGT-T 180761 || | ||||||| | | || || | |||||||||||||||||||| ||| | Sbjct 7910 TATGTCTGCTTGGAATCCGCCTGATTTTGCAAAGATGGCTCTTCCACCATGTCA-TGTCT 7852 Query 180762 TGGTACAATTTTATGTTA 180779 | ||||| ||||||| Sbjct 7851 TCTGTCAATTCTATGTTA 7834 >seq1180 Length=50914 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/251 (68%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 ||||| | || || | |||||||| | || ||||||||| ||||||||||||| Sbjct 34408 ATTTTCTTTGGACCGATTTACTATCAAAAATTGAAGCATATGGTTTTGGATAAAATGCAT 34467 Query 201981 GCGAGA---AGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCC 202037 || ||| || | || |||| | || ||| | ||||||| | ||| | || Sbjct 34468 GCAAGAGCAAG--AGGGCCAAG-AGCAGTTTTAACCAGACAACCAACCGAAGGTAGATCA 34524 Query 202038 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCC 202097 || |||||| || ||||| ||||||||||||| ||||||| || | | |||| ||| Sbjct 34525 AGAGATGGTGGTTTGAGATTGGGAGAAATGGAAAGAGATTGTGTTATAGCATATGGTGCC 34584 Query 202098 ACACAATTTTTAAATGAAAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGT 202157 | ||||| ||| |||||| | | | | || ||| | ||| || | ||| | ||| Sbjct 34585 TCTCAATTGTTATTGGAAAGATTAATGATATCATCTGATGCATTTGAAGTTGATATTTGT 34644 Query 202158 ACAAATTGTGG 202168 | || ||||| Sbjct 34645 AATAAATGTGG 34655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655264658257000