Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1163 140 4e-28 seq1180 93.3 5e-14 >seq1163 Length=41016 Score = 140 bits (154), Expect = 4e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 171603 TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGA 171662 |||| || | || || ||||| || || ||||| |||||| | || |||| ||| Sbjct 8195 TATCATTCATGAGCTCCTATGGTTTGTTGCTGGTTCGACTGATGCCAAGTTGTTAAGTGA 8136 Query 171663 TATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTT 171722 | |||||| || ||||| | | ||||||||||||||||| ||| || | || || Sbjct 8135 AAAAGGTGTCAAGATTTGGGAAGGTAATGGTTCTCGTGAATATTTGGACAATTTGGGATT 8076 Query 171723 TACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 171782 ||||| | |||||||||||||||||| ||||||| || |||||||||||| || Sbjct 8075 AACTGATCGTCGAGAAGGTGATTTAGGTCCGGTTTATGGGTTCCAATGGAGACATTTTGG 8016 Query 171783 GGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTA 171837 ||| | |||| || ||| |||| ||||| || || |||||| ||||||||| Sbjct 8015 AGCTGAGTATAAAGATTGTGATACTGATTATACTGGTCAAGGATATGACCAATTA 7961 >seq1180 Length=50914 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 193380 AAACACATGGTTAAGGATAAAATGCATGCTAGA---AGTCATGGGCAAGTGACTACTTTA 193436 || || |||||| ||||||||||||||| ||| || | || |||| | | |||| Sbjct 34441 AAGCATATGGTTTTGGATAAAATGCATGCAAGAGCAAG--AGGGCCAAGAG-CAGTTTTA 34497 Query 193437 CATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAA 193496 ||||||||| ||| | || || ||| ||||| ||||| |||||||||||| Sbjct 34498 ACCAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGTTTGAGATTGGGAGAAATGGAA 34557 Query 193497 AAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTAT 193556 | ||| ||| || ||| ||||||| ||||||| ||| |||||| | | | | Sbjct 34558 AGAGATTGTGTTATAGCATATGGTGCCTCTCAATTGTTATTGGAAAGATTAATGATATCA 34617 Query 193557 TCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGG 193594 |||||| | ||| |||| ||| |||| | ||||||| Sbjct 34618 TCTGATGCATTTGAAGTTGATATTTGTAATAAATGTGG 34655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628516484513280