Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1530 188 1e-42 >seq1530 Length=119309 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||| || | ||||||||| || || || || || |||| Sbjct 25132 TACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAG 25191 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||||||| ||||||| |||||| |||||||| || | | |||||||||||||| Sbjct 25192 ATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAG 25251 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| || || | || ||||| ||||| || ||| || ||| | Sbjct 25252 GAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 25311 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 25312 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | | |||||| || | ||||||||| || || || || || || | Sbjct 24904 TACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGG 24963 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||||||||||||||| |||||| |||||||| || | | |||||||||||| | Sbjct 24964 ATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 25023 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| || || | || ||||| ||||| || ||| || ||| | Sbjct 25024 GAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 25083 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 25084 CTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | || ||||| || | ||||||||| || || || || || ||||| Sbjct 24677 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 24736 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||| ||||||| |||||| ||||| || || | | |||||||||||| || Sbjct 24737 TAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 24796 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| || || | || ||||| ||||| || ||| || ||| || Sbjct 24797 GATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 24856 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || || ||||| || || || ||||| Sbjct 24857 TTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Score = 165 bits (182), Expect = 2e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||||| || | ||||||||| || || || || || || | Sbjct 25360 TACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGG 25419 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | ||||||||||||||| |||||| |||||||| || | | |||||||||||| | Sbjct 25420 ATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 25479 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| || || | || || || || || || || || ||||| Sbjct 25480 GAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTA 25539 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 |||| || || || ||||| || || || ||||| || || || |||||| ||| Sbjct 25540 CTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGTTA 25593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981803638294947