Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 271 2e-67
seq1180 188 2e-42
seq1387 147 5e-30
seq1840 123 6e-23
seq1755 113 1e-19
seq1527 104 6e-17
seq1808 93.3 1e-13
seq423 93.3 1e-13
seq32 84.2 5e-11
>seq1308
Length=6085
Score = 271 bits (300), Expect = 2e-67
Identities = 584/865 (68%), Gaps = 15/865 (2%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|||||||| || |||||| | ||| | |||||||| | | || ||||| | | |
Sbjct 5218 TATTTTGGATTTAAAACTTTAGAAAGATCTTATTTATTAAGAGTTAATGGTAAAGTTGCT 5159
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
||| | || ||||| | | | | || || |||||||||||||| |||||
Sbjct 5158 GAAAGACCACAACATTTAATCATGAGAGTGGCAATTGGTATTCATGGTAGGGATATCCCT 5099
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA----TGCTACTCC 110479
|||||||||| |||| || || | || | || ||| | |||| || | | ||
Sbjct 5098 CGAGTTATTGAATCTTATAAT--ATGATGTCACAA--AAGTTTTTCACTCATGGTTCACC 5043
Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAA 110538
|| ||||||| || || || | |||| || | || || |||||| | | |
Sbjct 5042 AACTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATG-TTTCTTAGTTGCCA 4984
Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598
| || |||||||| ||||| || ||||||||| || | ||| | ||| | ||||| |
Sbjct 4983 TGAAAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTTCAA 4924
Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658
| | |||| || |||||| | || ||||| ||||||| || | || || |||| |
Sbjct 4923 AGAGTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATATTG 4864
Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718
| | || ||| |||| | || || | || ||| || | || |||||| |||| |
Sbjct 4863 CTGGTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACACCG 4804
Query 110719 CAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775
|| ||||| ||||||||||||| |||| || | ||||| ||||| | ||||
Sbjct 4803 CACGTTATGTCGATCAAGGTGGTAATAAGAGACCAGGTGCTTTTGCCCTCTATTTAGAAC 4744
Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835
| |||||||||||||| ||||| || | || || | ||||||||||| ||||||
Sbjct 4743 CATGGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAGAAGAAA 4684
Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895
||||| | |||||||| ||| | |||||| | |||||||| ||||| |||||
Sbjct 4683 TTAGAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGCGTGTGG 4624
Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955
|| ||||||| ||| | | | | ||| || ||||||| || ||||||| |
Sbjct 4623 AACAAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTGATGTTT 4564
Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAA 111014
|||| |||| |||||| | | || |||||||||||| ||||| | | | ||||
Sbjct 4563 ATGGTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTAGACAAA 4504
Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074
| ||| || ||| || | |||| || | ||| | ||| ||||||||| |||
Sbjct 4503 C-TATTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTGGTACT 4445
Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134
|| | ||| || ||||||||| | |||| || | ||||||| ||||||||| |
Sbjct 4444 CCATTTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAGGTATT 4385
Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159
||||| || ||| || || ||||
Sbjct 4384 ATTAAATCATCTAACTTATGTTGTG 4360
>seq1180
Length=50914
Score = 188 bits (208), Expect = 2e-42
Identities = 308/440 (70%), Gaps = 9/440 (2%)
Strand=Plus/Plus
Query 110467 TTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCT 110526
||||||| | || || |||| || ||||||| |||| | || ||||||| |
Sbjct 27450 TTCATGCCTCACCAACTCTATACAATGCAGGAAGTAATTTTAATTACTTATCTTCTTG-T 27508
Query 110527 TTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT 110585
||||| || | || || || || || ||||| || ||||| | | ||| | || |||
Sbjct 27509 TTCTTACTTGCTATGAAAGAAGACTCAATTGATGGGATTTACAAAACGCTTCACGAGACT 27568
Query 110586 GCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAA 110645
||| | ||||| ||| ||| || || |||||| |||| |||||||||||||| || |
Sbjct 27569 GCTTTGATTTCGAAAGCCTCCGGTGGTATTGGTGTTCATGTTCATGATATTCGTTCCAGT 27628
Query 110646 GGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTC 110705
|| || ||||||| | || || || | ||| | ||||||||| | | ||
Sbjct 27629 GGGTCATTCATCGCAAGCACAAACGGAAAGTCTTCCGGATTGGTTCCAATGCTCCGCGTG 27688
Query 110706 TTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGC-----TCATTTG 110760
|| ||| ||||||||| |||||| ||||||||||| | ||| ||| |||| |
Sbjct 27689 TTTAACAACACTGCAAGATATGTAGATCAAGGTGGT--GGTAAACGGCCGGGGGCATTCG 27746
Query 110761 CTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATC 110820
|||| ||| | || ||||||||| ||||| ||||| | ||||| | | |||||||
Sbjct 27747 CTATATATATAGAGCCTTGGCATGGCGATATCTTTGATATTTTAGATATGAGAAAAAATC 27806
Query 110821 AAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTAT 110880
| || |||||| |||||| | | |||||||| |||| | | ||| | | |||||||
Sbjct 27807 ATGGTAATGAAGAGCAAAGAACTAGGGATTTATTCTATGGATTATGGGTGCCTGATTTAT 27866
Query 110881 TCATGAAACGTGTTCAAGAA 110900
|||||| || || |||||
Sbjct 27867 TCATGAGGCGAGTGAAAGAA 27886
>seq1387
Length=15432
Score = 147 bits (162), Expect = 5e-30
Identities = 390/584 (67%), Gaps = 19/584 (3%)
Strand=Plus/Minus
Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494
|||||||||| | |||| || ||| | | || |||||| | | || | || |||
Sbjct 3070 TTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGG 3011
Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGG---GAAAAATT-AACCTT 131550
|||| |||||| || ||| | | || ||| | |||||||| || ||||| || |
Sbjct 3010 ACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGATTGGAGAGATAAATTGAATGAT 2951
Query 131551 GAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGT 131610
|| ||||| | |||| |||| | ||| | |||||||| || | | |||||| |||||
Sbjct 2950 GA-TGAAAGATATTTCATTTCAAGAGTCTTAGCATTCTTTGCTGCATCTGATGGTATTGT 2892
Query 131611 TATTGAAAATCTTGTTATTAATTTCATTCA--AGAAATTGATATTCCTGAAGTAACATCG 131668
|| ||||||| | || ||||| |||| |||| || | ||||| |||| | |||
Sbjct 2891 TAATGAAAATTTAATTGAAAATTT--TTCAGCAGAAGTTCAAATTCCAGAAGCTAAATCA 2834
Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATT 131728
||||| |||||| ||||| ||||||| || | ||||| | || |||
Sbjct 2833 TTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGAAACTTATTCCCTTTTAATT 2774
Query 131729 GAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTT 131788
|| | | | ||||| || | | || || | |||||| ||||| | | | ||
Sbjct 2773 GATACTTATATTAAAGATCCAAAGGAAGCTGATTACTTATTTAATGCTATTGAACATATT 2714
Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAA-ATGGATTCAAGATGATTCCG---- 131843
||| || | || ||||| || ||||| ||||| |||||| || |||| | |
Sbjct 2713 CCTTGTATCAGAAGAAAAGCTGATTGGGC-ATTAAGATGGAT-CAC--TGATACTGAAGT 2658
Query 131844 CTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTG 131903
|| || | || |||| | || || |||||| |||||||||||| |||||| ||
Sbjct 2657 CTTATATG-CTGAAAGATTAGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTTAGTGGAT 2599
Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963
| || | || || ||| | ||||| | || || ||||| || | | || || |
Sbjct 2598 CATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGCCAGGTTTAACTTTCTCAA 2539
Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007
|| |||| || | |||||||||| || |||||||| ||||||
Sbjct 2538 ATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTGCT 2495
>seq1840
Length=120634
Score = 123 bits (136), Expect = 6e-23
Identities = 165/223 (74%), Gaps = 10/223 (4%)
Strand=Plus/Plus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||||| ||| ||||| ||| | || ||| | ||||| ||| | |||||||||||
Sbjct 100074 CATTTGATGGACGATGATCCAGTTTTATTTAATCGTCAACCTTCATTACATAAAATGTCG 100133
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTA--AG 305424
|||||||| |||| ||| ||||| ||| | ||| | |||| |||||||| || ||
Sbjct 100134 ATGATGGCACATAGAGTTAAAGT--TATGCCATATTCAACTTTCAGATTAAATTTATCAG 100191
Query 305425 TG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483
| ||| | || |||||||| ||||| ||||| |||||||||||| | ||||| || |
Sbjct 100192 TCACTTCTCCG---TATAATGCTGATTTCGATGGTGATGAAATGAATTTACATGTTCCAC 100248
Query 305484 AATCAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGT 305526
|||| | |||| | |||||||| |||||||| ||||
Sbjct 100249 AATCTCCAGAAACAAGATCAGAATTATCTCAAATATGTGCTGT 100291
Score = 89.7 bits (98), Expect = 1e-12
Identities = 180/260 (69%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945
||||||| ||| | ||||||| ||||||||||| || || ||| ||| || |
Sbjct 99657 TTACAATTCCATGTGGCAACATATATGGATAATGATATCGCGGGACAACCGCAAGCTCTT 99716
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGGTCG 305004
|||| | |||| | || | || ||| || |||| | | ||||||||||| ||| |
Sbjct 99717 CAAAAAACTGGTCGTCCAATCAAATCTATCAGAGCAA-GATTGAAAGGTAAAGAAGGTAG 99775
Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064
| |||||||| ||||||| || |||||||||||| ||| | | ||| || |
Sbjct 99776 ATTAAGAGGTAATTTAATGGGTAAGCGTGTTGATTTTTCTGCTCGTACTGTTATTTCTGG 99835
Query 305065 TGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAAC--T 305121
|||| || || |||| | | || || | || |||||||| |||||| ||||| |
Sbjct 99836 TGATCCT-AATTTAGATTTAGATCAAGTTGGGGTTCCAATCTCAATTGC--AAAAACTTT 99892
Query 305122 AACATTTCCAGAGAAAGTTA 305141
|||| |||||| | ||||
Sbjct 99893 GACATATCCAGAAATTGTTA 99912
>seq1755
Length=56564
Score = 113 bits (124), Expect = 1e-19
Identities = 297/446 (67%), Gaps = 32/446 (7%)
Strand=Plus/Minus
Query 277898 GAACACATCTATAAAATTCCAGATACTTATATAGGATCTGTTGAAGAATCTCTAATAACT 277957
||||| |||| || | |||||||||||||| |||||||| ||| || || ||||
Sbjct 40164 GAACATATCTTAAAGAGACCAGATACTTATATTGGATCTGTCGAAAAAACT--AATATGG 40107
Query 277958 ACTTATGAGGTCTCAAATGATAAAATGATTGAATCGGAATTAAAGATT-----ATTG--- 278009
| ||||| || || | | || ||| | ||| | |||||||| ||||
Sbjct 40106 AATTATGGTGTTTCGATTCTGAATCTGAATCAATGAAATTTAAAGATGTCACGATTGTGC 40047
Query 278010 CAGGATTCTATAAGATATTCGACGAGATTATTGTAAATGCTTGGGACCAATACGTTAGAA 278069
|||| || || || || || || || ||| | || |||||| || |||| | |
Sbjct 40046 CAGGGTTATACAAAATCTTTGATGAAATTTTAGTCAATGCTGCTGAT-AATAAG-----A 39993
Query 278070 TGAAAGATACTAAAAATCCAGTGAAGAACATTCATGTTACGATCGAT----AATATGTCT 278125
| | |||| | | ||| ||||||| |||| ||||| || ||| || ||
Sbjct 39992 TTAGAGATCCCA-----CCA-TGAAGAATATTCGTGTTAAAATTGATCCGGAAAATAA-- 39941
Query 278126 GGTGTTATATCTGTTAAAAATGACGGGCCTGGTATTGATATTGCAATGCATCCTAAGGAA 278185
| | || || | ||||| ||| |||||| ||| ||| ||| | || |||
Sbjct 39940 --TATGATCCAGGTCATGAATGATGGGAAAGGTATTCCGGTTGAAATTCATACCAAAGAA 39883
Query 278186 AACAAGTACACAGTTGAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAA 278245
|||| ||| | ||| |||| ||||| ||||||||||| ||| ||||||| | ||
Sbjct 39882 AACATGTATATTCCAGAATTGATTTTTGGTAATTTATTGACTTCTTCTAATTATGATGAT 39823
Query 278246 GATGAAGAGCGACTCACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTC 278305
|||||| || | |||| || || | |||||| ||||| || || | ||||| |||
Sbjct 39822 GATGAAAAGAAAGTCACTGGTGGTAGAAATGGTTATGGTGCTAAATTATGTAATATTTTC 39763
Query 278306 TCAAA-ATGCTTTGAAGTTGAAACTG 278330
|| | ||| ||||||||||||||||
Sbjct 39762 TCCACTATG-TTTGAAGTTGAAACTG 39738
>seq1527
Length=37043
Score = 104 bits (114), Expect = 6e-17
Identities = 120/158 (76%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || || ||||| || || ||| |||||| | ||||||| | | ||| | | ||||
Sbjct 28711 GTCCTATTTAATAGACAGCCTTCATTGCATAGATTGTCTATTTTATCACATTATGCCAAA 28770
Query 305390 GTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447
| | || |||| ||||| || || |||| | ||| |||||| ||||||||||| |
Sbjct 28771 AT-TCGTCCATGGAGA-ACATTCCGTTTGAATGAATGTGTTTGTACACCTTATAATGCCG 28828
Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
|||||||||| |||||||||||| ||||||| || |||
Sbjct 28829 ATTTTGATGGTGATGAAATGAATTTGCATGTTCCACAA 28866
>seq1808
Length=55700
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309
|||||||||||||||||| ||||||||| ||||| |||| || || |||| |
Sbjct 6792 CCAGCATTATCGAATTCACCACAATAATTTGGAGCTGAGAATAACGTGACCAATTGTCTT 6733
Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
|| |||| |||||||||||||||||||| |||| ||| |||||
Sbjct 6732 TTTGAAAAGAATTCATAACCATCTTCAACGACTTGATGAGCACG 6689
>seq423
Length=709
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309
|||||||||||||||||| ||||||||| ||||| |||| || || |||| |
Sbjct 260 CCAGCATTATCGAATTCACCACAATAATTTGGAGCTGAGAATAACGTGACCAATTGTCTT 201
Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
|| |||| |||||||||||||||||||| |||| ||| |||||
Sbjct 200 TTTGAAAAGAATTCATAACCATCTTCAACGACTTGATGAGCACG 157
>seq32
Length=12588
Score = 84.2 bits (92), Expect = 5e-11
Identities = 136/191 (71%), Gaps = 10/191 (5%)
Strand=Plus/Minus
Query 305301 TTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATA 305360
|||| |||||| | || | |||||| ||| | | ||| | ||||| | ||||||
Sbjct 8546 TTAT-AGACATATTAAGAATAATGATGTTGTTATCATGAATCGTCAACCTACCTTGCATA 8488
Query 305361 AAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAA 305417
|| || ||||||| |||||| || | ||| ||| | || | |||||| ||||
Sbjct 8487 AAGCTTCAATGATGGGTCATAAGGTTAGAGTTTTACCAGGTGAAAAGACATTAAGATTGC 8428
Query 305418 ATGTAAGTGCTTGTACGC---CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474
|| || ||| ||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 8427 AT-TA--TGCCAATACCGGTGCTTATAATGCCGATTTTGATGGTGATGAAATGAATATGC 8371
Query 305475 ATGTACCTCAA 305485
|| | || |||
Sbjct 8370 ATTTTCCACAA 8360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186784319088953
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |