Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1308 271 2e-67 seq1180 188 2e-42 seq1387 147 5e-30 seq1840 123 6e-23 seq1755 113 1e-19 seq1527 104 6e-17 seq1808 93.3 1e-13 seq423 93.3 1e-13 seq32 84.2 5e-11 >seq1308 Length=6085 Score = 271 bits (300), Expect = 2e-67 Identities = 584/865 (68%), Gaps = 15/865 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| || |||||| | ||| | |||||||| | | || ||||| | | | Sbjct 5218 TATTTTGGATTTAAAACTTTAGAAAGATCTTATTTATTAAGAGTTAATGGTAAAGTTGCT 5159 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || ||||| | | | | || || |||||||||||||| ||||| Sbjct 5158 GAAAGACCACAACATTTAATCATGAGAGTGGCAATTGGTATTCATGGTAGGGATATCCCT 5099 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA----TGCTACTCC 110479 |||||||||| |||| || || | || | || ||| | |||| || | | || Sbjct 5098 CGAGTTATTGAATCTTATAAT--ATGATGTCACAA--AAGTTTTTCACTCATGGTTCACC 5043 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAA 110538 || ||||||| || || || | |||| || | || || |||||| | | | Sbjct 5042 AACTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATG-TTTCTTAGTTGCCA 4984 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | || |||||||| ||||| || ||||||||| || | ||| | ||| | ||||| | Sbjct 4983 TGAAAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTTCAA 4924 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | | |||| || |||||| | || ||||| ||||||| || | || || |||| | Sbjct 4923 AGAGTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATATTG 4864 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || ||| |||| | || || | || ||| || | || |||||| |||| | Sbjct 4863 CTGGTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACACCG 4804 Query 110719 CAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 || ||||| ||||||||||||| |||| || | ||||| ||||| | |||| Sbjct 4803 CACGTTATGTCGATCAAGGTGGTAATAAGAGACCAGGTGCTTTTGCCCTCTATTTAGAAC 4744 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | |||||||||||||| ||||| || | || || | ||||||||||| |||||| Sbjct 4743 CATGGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAGAAGAAA 4684 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 ||||| | |||||||| ||| | |||||| | |||||||| ||||| ||||| Sbjct 4683 TTAGAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGCGTGTGG 4624 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 || ||||||| ||| | | | | ||| || ||||||| || ||||||| | Sbjct 4623 AACAAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTGATGTTT 4564 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAA 111014 |||| |||| |||||| | | || |||||||||||| ||||| | | | |||| Sbjct 4563 ATGGTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTAGACAAA 4504 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 | ||| || ||| || | |||| || | ||| | ||| ||||||||| ||| Sbjct 4503 C-TATTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTGGTACT 4445 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 || | ||| || ||||||||| | |||| || | ||||||| ||||||||| | Sbjct 4444 CCATTTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAGGTATT 4385 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||| || ||| || || |||| Sbjct 4384 ATTAAATCATCTAACTTATGTTGTG 4360 >seq1180 Length=50914 Score = 188 bits (208), Expect = 2e-42 Identities = 308/440 (70%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 110467 TTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCT 110526 ||||||| | || || |||| || ||||||| |||| | || ||||||| | Sbjct 27450 TTCATGCCTCACCAACTCTATACAATGCAGGAAGTAATTTTAATTACTTATCTTCTTG-T 27508 Query 110527 TTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT 110585 ||||| || | || || || || || ||||| || ||||| | | ||| | || ||| Sbjct 27509 TTCTTACTTGCTATGAAAGAAGACTCAATTGATGGGATTTACAAAACGCTTCACGAGACT 27568 Query 110586 GCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAA 110645 ||| | ||||| ||| ||| || || |||||| |||| |||||||||||||| || | Sbjct 27569 GCTTTGATTTCGAAAGCCTCCGGTGGTATTGGTGTTCATGTTCATGATATTCGTTCCAGT 27628 Query 110646 GGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTC 110705 || || ||||||| | || || || | ||| | ||||||||| | | || Sbjct 27629 GGGTCATTCATCGCAAGCACAAACGGAAAGTCTTCCGGATTGGTTCCAATGCTCCGCGTG 27688 Query 110706 TTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGC-----TCATTTG 110760 || ||| ||||||||| |||||| ||||||||||| | ||| ||| |||| | Sbjct 27689 TTTAACAACACTGCAAGATATGTAGATCAAGGTGGT--GGTAAACGGCCGGGGGCATTCG 27746 Query 110761 CTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATC 110820 |||| ||| | || ||||||||| ||||| ||||| | ||||| | | ||||||| Sbjct 27747 CTATATATATAGAGCCTTGGCATGGCGATATCTTTGATATTTTAGATATGAGAAAAAATC 27806 Query 110821 AAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTAT 110880 | || |||||| |||||| | | |||||||| |||| | | ||| | | ||||||| Sbjct 27807 ATGGTAATGAAGAGCAAAGAACTAGGGATTTATTCTATGGATTATGGGTGCCTGATTTAT 27866 Query 110881 TCATGAAACGTGTTCAAGAA 110900 |||||| || || ||||| Sbjct 27867 TCATGAGGCGAGTGAAAGAA 27886 >seq1387 Length=15432 Score = 147 bits (162), Expect = 5e-30 Identities = 390/584 (67%), Gaps = 19/584 (3%) Strand=Plus/Minus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 |||||||||| | |||| || ||| | | || |||||| | | || | || ||| Sbjct 3070 TTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGG 3011 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGG---GAAAAATT-AACCTT 131550 |||| |||||| || ||| | | || ||| | |||||||| || ||||| || | Sbjct 3010 ACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGATTGGAGAGATAAATTGAATGAT 2951 Query 131551 GAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGT 131610 || ||||| | |||| |||| | ||| | |||||||| || | | |||||| ||||| Sbjct 2950 GA-TGAAAGATATTTCATTTCAAGAGTCTTAGCATTCTTTGCTGCATCTGATGGTATTGT 2892 Query 131611 TATTGAAAATCTTGTTATTAATTTCATTCA--AGAAATTGATATTCCTGAAGTAACATCG 131668 || ||||||| | || ||||| |||| |||| || | ||||| |||| | ||| Sbjct 2891 TAATGAAAATTTAATTGAAAATTT--TTCAGCAGAAGTTCAAATTCCAGAAGCTAAATCA 2834 Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATT 131728 ||||| |||||| ||||| ||||||| || | ||||| | || ||| Sbjct 2833 TTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGAAACTTATTCCCTTTTAATT 2774 Query 131729 GAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTT 131788 || | | | ||||| || | | || || | |||||| ||||| | | | || Sbjct 2773 GATACTTATATTAAAGATCCAAAGGAAGCTGATTACTTATTTAATGCTATTGAACATATT 2714 Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAA-ATGGATTCAAGATGATTCCG---- 131843 ||| || | || ||||| || ||||| ||||| |||||| || |||| | | Sbjct 2713 CCTTGTATCAGAAGAAAAGCTGATTGGGC-ATTAAGATGGAT-CAC--TGATACTGAAGT 2658 Query 131844 CTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTG 131903 || || | || |||| | || || |||||| |||||||||||| |||||| || Sbjct 2657 CTTATATG-CTGAAAGATTAGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTTAGTGGAT 2599 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 | || | || || ||| | ||||| | || || ||||| || | | || || | Sbjct 2598 CATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGCCAGGTTTAACTTTCTCAA 2539 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 || |||| || | |||||||||| || |||||||| |||||| Sbjct 2538 ATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTGCT 2495 >seq1840 Length=120634 Score = 123 bits (136), Expect = 6e-23 Identities = 165/223 (74%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| ||||| ||| | || ||| | ||||| ||| | ||||||||||| Sbjct 100074 CATTTGATGGACGATGATCCAGTTTTATTTAATCGTCAACCTTCATTACATAAAATGTCG 100133 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTA--AG 305424 |||||||| |||| ||| ||||| ||| | ||| | |||| |||||||| || || Sbjct 100134 ATGATGGCACATAGAGTTAAAGT--TATGCCATATTCAACTTTCAGATTAAATTTATCAG 100191 Query 305425 TG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 | ||| | || |||||||| ||||| ||||| |||||||||||| | ||||| || | Sbjct 100192 TCACTTCTCCG---TATAATGCTGATTTCGATGGTGATGAAATGAATTTACATGTTCCAC 100248 Query 305484 AATCAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGT 305526 |||| | |||| | |||||||| |||||||| |||| Sbjct 100249 AATCTCCAGAAACAAGATCAGAATTATCTCAAATATGTGCTGT 100291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 180/260 (69%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| ||| | ||||||| ||||||||||| || || ||| ||| || | Sbjct 99657 TTACAATTCCATGTGGCAACATATATGGATAATGATATCGCGGGACAACCGCAAGCTCTT 99716 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGGTCG 305004 |||| | |||| | || | || ||| || |||| | | ||||||||||| ||| | Sbjct 99717 CAAAAAACTGGTCGTCCAATCAAATCTATCAGAGCAA-GATTGAAAGGTAAAGAAGGTAG 99775 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 | |||||||| ||||||| || |||||||||||| ||| | | ||| || | Sbjct 99776 ATTAAGAGGTAATTTAATGGGTAAGCGTGTTGATTTTTCTGCTCGTACTGTTATTTCTGG 99835 Query 305065 TGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAAC--T 305121 |||| || || |||| | | || || | || |||||||| |||||| ||||| | Sbjct 99836 TGATCCT-AATTTAGATTTAGATCAAGTTGGGGTTCCAATCTCAATTGC--AAAAACTTT 99892 Query 305122 AACATTTCCAGAGAAAGTTA 305141 |||| |||||| | |||| Sbjct 99893 GACATATCCAGAAATTGTTA 99912 >seq1755 Length=56564 Score = 113 bits (124), Expect = 1e-19 Identities = 297/446 (67%), Gaps = 32/446 (7%) Strand=Plus/Minus Query 277898 GAACACATCTATAAAATTCCAGATACTTATATAGGATCTGTTGAAGAATCTCTAATAACT 277957 ||||| |||| || | |||||||||||||| |||||||| ||| || || |||| Sbjct 40164 GAACATATCTTAAAGAGACCAGATACTTATATTGGATCTGTCGAAAAAACT--AATATGG 40107 Query 277958 ACTTATGAGGTCTCAAATGATAAAATGATTGAATCGGAATTAAAGATT-----ATTG--- 278009 | ||||| || || | | || ||| | ||| | |||||||| |||| Sbjct 40106 AATTATGGTGTTTCGATTCTGAATCTGAATCAATGAAATTTAAAGATGTCACGATTGTGC 40047 Query 278010 CAGGATTCTATAAGATATTCGACGAGATTATTGTAAATGCTTGGGACCAATACGTTAGAA 278069 |||| || || || || || || || ||| | || |||||| || |||| | | Sbjct 40046 CAGGGTTATACAAAATCTTTGATGAAATTTTAGTCAATGCTGCTGAT-AATAAG-----A 39993 Query 278070 TGAAAGATACTAAAAATCCAGTGAAGAACATTCATGTTACGATCGAT----AATATGTCT 278125 | | |||| | | ||| ||||||| |||| ||||| || ||| || || Sbjct 39992 TTAGAGATCCCA-----CCA-TGAAGAATATTCGTGTTAAAATTGATCCGGAAAATAA-- 39941 Query 278126 GGTGTTATATCTGTTAAAAATGACGGGCCTGGTATTGATATTGCAATGCATCCTAAGGAA 278185 | | || || | ||||| ||| |||||| ||| ||| ||| | || ||| Sbjct 39940 --TATGATCCAGGTCATGAATGATGGGAAAGGTATTCCGGTTGAAATTCATACCAAAGAA 39883 Query 278186 AACAAGTACACAGTTGAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAA 278245 |||| ||| | ||| |||| ||||| ||||||||||| ||| ||||||| | || Sbjct 39882 AACATGTATATTCCAGAATTGATTTTTGGTAATTTATTGACTTCTTCTAATTATGATGAT 39823 Query 278246 GATGAAGAGCGACTCACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTC 278305 |||||| || | |||| || || | |||||| ||||| || || | ||||| ||| Sbjct 39822 GATGAAAAGAAAGTCACTGGTGGTAGAAATGGTTATGGTGCTAAATTATGTAATATTTTC 39763 Query 278306 TCAAA-ATGCTTTGAAGTTGAAACTG 278330 || | ||| |||||||||||||||| Sbjct 39762 TCCACTATG-TTTGAAGTTGAAACTG 39738 >seq1527 Length=37043 Score = 104 bits (114), Expect = 6e-17 Identities = 120/158 (76%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||||| || || ||| |||||| | ||||||| | | ||| | | |||| Sbjct 28711 GTCCTATTTAATAGACAGCCTTCATTGCATAGATTGTCTATTTTATCACATTATGCCAAA 28770 Query 305390 GTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | | || |||| ||||| || || |||| | ||| |||||| ||||||||||| | Sbjct 28771 AT-TCGTCCATGGAGA-ACATTCCGTTTGAATGAATGTGTTTGTACACCTTATAATGCCG 28828 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||| |||||||||||| ||||||| || ||| Sbjct 28829 ATTTTGATGGTGATGAAATGAATTTGCATGTTCCACAA 28866 >seq1808 Length=55700 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309 |||||||||||||||||| ||||||||| ||||| |||| || || |||| | Sbjct 6792 CCAGCATTATCGAATTCACCACAATAATTTGGAGCTGAGAATAACGTGACCAATTGTCTT 6733 Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || |||| |||||||||||||||||||| |||| ||| ||||| Sbjct 6732 TTTGAAAAGAATTCATAACCATCTTCAACGACTTGATGAGCACG 6689 >seq423 Length=709 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309 |||||||||||||||||| ||||||||| ||||| |||| || || |||| | Sbjct 260 CCAGCATTATCGAATTCACCACAATAATTTGGAGCTGAGAATAACGTGACCAATTGTCTT 201 Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || |||| |||||||||||||||||||| |||| ||| ||||| Sbjct 200 TTTGAAAAGAATTCATAACCATCTTCAACGACTTGATGAGCACG 157 >seq32 Length=12588 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 305301 TTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATA 305360 |||| |||||| | || | |||||| ||| | | ||| | ||||| | |||||| Sbjct 8546 TTAT-AGACATATTAAGAATAATGATGTTGTTATCATGAATCGTCAACCTACCTTGCATA 8488 Query 305361 AAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAA 305417 || || ||||||| |||||| || | ||| ||| | || | |||||| |||| Sbjct 8487 AAGCTTCAATGATGGGTCATAAGGTTAGAGTTTTACCAGGTGAAAAGACATTAAGATTGC 8428 Query 305418 ATGTAAGTGCTTGTACGC---CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474 || || ||| ||| |||||||||| ||||||||||| |||||||||||||||| Sbjct 8427 AT-TA--TGCCAATACCGGTGCTTATAATGCCGATTTTGATGGTGATGAAATGAATATGC 8371 Query 305475 ATGTACCTCAA 305485 || | || ||| Sbjct 8370 ATTTTCCACAA 8360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186784319088953