Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1387 334 6e-87 seq1430 145 6e-30 >seq1387 Length=15432 Score = 334 bits (370), Expect = 6e-87 Identities = 620/897 (69%), Gaps = 17/897 (2%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| ||| ||||| ||||||||||| ||||||||| || |||||| | ||| Sbjct 3094 GAAAATCCACGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTAC 3035 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || |||||| | || ||||||||||| || |||||| ||||||| | ||| || ||| Sbjct 3034 AAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACAT 2975 Query 43805 CATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 |||||| | ||| || | |||| | |||| || || || || || || Sbjct 2974 GATTGGAGAGATAAATTGAATGATGATGAAAGATATTTCATTTCAAGAGTCTTAGCATTC 2915 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921 |||||||| || || || || ||||||||||| || ||| | ||||||| Sbjct 2914 TTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTT 2855 Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981 ||| | |||||||| || || ||||||||||||||| || |||||||||||||| Sbjct 2854 CAAATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCT 2795 Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGAT 44039 |||| || ||| | || ||||| || || |||||| || ||||| || | Sbjct 2794 GAAACTTATTCCCTTTTAATTGATACTTATATTAAAGATC--CAAAGGAAGCTGATTACT 2737 Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 | |||||||| || ||| | ||| || | | ||||| || ||||| | | || Sbjct 2736 TATTTAATGCTATTGAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGCATTAAGAT 2677 Query 44100 GGATAAATTCAAATGAT-TCTTTT--GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 |||| | | | ||| |||| | | ||| || | || || ||||| | ||| |||| Sbjct 2676 GGATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGTTGCATTTGCTGCTGTTGAAG 2617 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | ||||||||| ||||| ||||| | || || |||||||||||| |||| || |||| Sbjct 2616 GTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGC 2557 Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276 | || || || || |||||||| ||||| || | |||||||| |||||| ||||||| Sbjct 2556 CAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTG 2497 Query 44277 CTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGAT 44335 |||| || ||| ||| || | || || || || | || | | | | | | Sbjct 2496 CTTGTTTATTATTTGCTCATTT--GA-ACAAT-AGACCAGATCCAGAAATCGTGGAAAAG 2441 Query 44336 ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAAT 44395 ||| |||| || || || | || ||| |||||| | | || |||||||| || | | Sbjct 2440 ATTATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCACTGATGCATTACCAGTTAGT 2381 Query 44396 TTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTT 44454 ||| |||| ||||| || | |||||| |||||| |||||| |||| || | || Sbjct 2380 TTATTAGGTATGAACTGTA-AATTGATGTGTCAATATGTTGAATTTGTTGCCGACAGATT 2322 Query 44455 ACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGA 44514 | | | | | | ||| | || |||| ||| ||||| || ||||| |||||||| Sbjct 2321 ATTAGTTGCATTTGGTAATAAGAAGGTTTATAATGTTCAAAATCCATTTGACTTTATGGA 2262 Query 44515 AAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||||||||| || | || ||||| |||||||||||||| | ||| || ||||| Sbjct 2261 AAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTTTCTGATTATCA 2205 >seq1430 Length=62949 Score = 145 bits (160), Expect = 6e-30 Identities = 250/358 (70%), Gaps = 20/358 (6%) Strand=Plus/Minus Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 ||| ||||| || ||||| || ||||||||||| || | ||||||||| ||| || Sbjct 33154 AAAGAACCT---AAGATTGTCAACGGTCCTGAAATGTTGAGTAAATATGTTGGTGCTTCA 33098 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539 |||||||| | || ||| || || || |||| ||| | |||| |||| | Sbjct 33097 GAAGAAAACATTCGTAATTTATTCAAAGATGCAGAAGCCGAATACAAACAAA-AGGGAGA 33039 Query 19540 AAAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 | | |||| || ||| | || ||| | ||||||||||| | ||| || |||||| Sbjct 33038 AGA--TTCTGATTTACACGTCATTATATTCGATGAATTGGATTCTGTCTTCAAACAAAGA 32981 Query 19597 GGTTCTGGTGTAAATGGA--GTACA--------TGACACTGTTGTCAATCAACTCCTGTC 19646 || || || || ||| |||| ||||| ||||||||| ||| | | || Sbjct 32980 GGATC-GGCCAAATCGGACGGTACTGGTGTTGGTGACAATGTTGTCAACCAATTATTATC 32922 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706 ||| | ||||||||| | ||| |||||||||||||||||||||| ||||||||| | | Sbjct 32921 AAAGATGGACGGTGTTGATCAATTGAATAATATTTTAGTTATTGGTATGACTAATCGTTT 32862 Query 19707 GGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 || ||||| || | || ||||| |||| ||| | || ||||| | || |||||| Sbjct 32861 AGATTTAATTGATACTGCATTATTGAGACCAGGTAGATTTGAAATTCAAATTGAAATT 32804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446927197365