Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 334 6e-87
seq1430 145 6e-30
>seq1387
Length=15432
Score = 334 bits (370), Expect = 6e-87
Identities = 620/897 (69%), Gaps = 17/897 (2%)
Strand=Plus/Minus
Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744
|||||||| ||| ||||| ||||||||||| ||||||||| || |||||| | |||
Sbjct 3094 GAAAATCCACGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTAC 3035
Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804
|| |||||| | || ||||||||||| || |||||| ||||||| | ||| || |||
Sbjct 3034 AAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACAT 2975
Query 43805 CATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861
|||||| | ||| || | |||| | |||| || || || || || ||
Sbjct 2974 GATTGGAGAGATAAATTGAATGATGATGAAAGATATTTCATTTCAAGAGTCTTAGCATTC 2915
Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921
|||||||| || || || || ||||||||||| || ||| | |||||||
Sbjct 2914 TTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTT 2855
Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981
||| | |||||||| || || ||||||||||||||| || ||||||||||||||
Sbjct 2854 CAAATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCT 2795
Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGAT 44039
|||| || ||| | || ||||| || || |||||| || ||||| || |
Sbjct 2794 GAAACTTATTCCCTTTTAATTGATACTTATATTAAAGATC--CAAAGGAAGCTGATTACT 2737
Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099
| |||||||| || ||| | ||| || | | ||||| || ||||| | | ||
Sbjct 2736 TATTTAATGCTATTGAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGCATTAAGAT 2677
Query 44100 GGATAAATTCAAATGAT-TCTTTT--GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156
|||| | | | ||| |||| | | ||| || | || || ||||| | ||| ||||
Sbjct 2676 GGATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGTTGCATTTGCTGCTGTTGAAG 2617
Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216
| ||||||||| ||||| ||||| | || || |||||||||||| |||| || ||||
Sbjct 2616 GTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGC 2557
Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276
| || || || || |||||||| ||||| || | |||||||| |||||| |||||||
Sbjct 2556 CAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTG 2497
Query 44277 CTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGAT 44335
|||| || ||| ||| || | || || || || | || | | | | | |
Sbjct 2496 CTTGTTTATTATTTGCTCATTT--GA-ACAAT-AGACCAGATCCAGAAATCGTGGAAAAG 2441
Query 44336 ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAAT 44395
||| |||| || || || | || ||| |||||| | | || |||||||| || | |
Sbjct 2440 ATTATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCACTGATGCATTACCAGTTAGT 2381
Query 44396 TTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTT 44454
||| |||| ||||| || | |||||| |||||| |||||| |||| || | ||
Sbjct 2380 TTATTAGGTATGAACTGTA-AATTGATGTGTCAATATGTTGAATTTGTTGCCGACAGATT 2322
Query 44455 ACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGA 44514
| | | | | | ||| | || |||| ||| ||||| || ||||| ||||||||
Sbjct 2321 ATTAGTTGCATTTGGTAATAAGAAGGTTTATAATGTTCAAAATCCATTTGACTTTATGGA 2262
Query 44515 AAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571
||||||||| || | || ||||| |||||||||||||| | ||| || |||||
Sbjct 2261 AAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTTTCTGATTATCA 2205
>seq1430
Length=62949
Score = 145 bits (160), Expect = 6e-30
Identities = 250/358 (70%), Gaps = 20/358 (6%)
Strand=Plus/Minus
Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479
||| ||||| || ||||| || ||||||||||| || | ||||||||| ||| ||
Sbjct 33154 AAAGAACCT---AAGATTGTCAACGGTCCTGAAATGTTGAGTAAATATGTTGGTGCTTCA 33098
Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539
|||||||| | || ||| || || || |||| ||| | |||| |||| |
Sbjct 33097 GAAGAAAACATTCGTAATTTATTCAAAGATGCAGAAGCCGAATACAAACAAA-AGGGAGA 33039
Query 19540 AAAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596
| | |||| || ||| | || ||| | ||||||||||| | ||| || ||||||
Sbjct 33038 AGA--TTCTGATTTACACGTCATTATATTCGATGAATTGGATTCTGTCTTCAAACAAAGA 32981
Query 19597 GGTTCTGGTGTAAATGGA--GTACA--------TGACACTGTTGTCAATCAACTCCTGTC 19646
|| || || || ||| |||| ||||| ||||||||| ||| | | ||
Sbjct 32980 GGATC-GGCCAAATCGGACGGTACTGGTGTTGGTGACAATGTTGTCAACCAATTATTATC 32922
Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706
||| | ||||||||| | ||| |||||||||||||||||||||| ||||||||| | |
Sbjct 32921 AAAGATGGACGGTGTTGATCAATTGAATAATATTTTAGTTATTGGTATGACTAATCGTTT 32862
Query 19707 GGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764
|| ||||| || | || ||||| |||| ||| | || ||||| | || ||||||
Sbjct 32861 AGATTTAATTGATACTGCATTATTGAGACCAGGTAGATTTGAAATTCAAATTGAAATT 32804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397446927197365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |