Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1308 102 7e-17 seq1180 95.1 1e-14 >seq1308 Length=6085 Score = 102 bits (112), Expect = 7e-17 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 || || ||||| || ||||||||||| ||||| || | |||||| || || | |||| Sbjct 4614 CCATTTTGTTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCT 4673 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755 || ||| | | |||||| |||| | ||||| | | || | ||| || ||||| || Sbjct 4674 CTGGCTCTAATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCT 4733 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTA 131812 | |||||| ||||| ||||| | || | || ||| | | ||||| ||||||| Sbjct 4734 GAATGCCATGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCG 4793 Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872 |||| ||| | |||||||| | || || | |||||| | |||||||| | ||| Sbjct 4794 ACATAACGTGCGGTGTTGTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCA 4853 Query 131873 TTGGT 131877 || || Sbjct 4854 TTAGT 4858 >seq1180 Length=50914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 ||| | | || |||||| | ||| | || |||||| |||| || ||||| |||||| Sbjct 27912 GGAGAAAATAACGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAAATCAGGCACC 27853 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAA 131733 ||||| | || || | ||| |||| | ||| |||||| || |||| ||||||| ||| Sbjct 27852 CATAATCCATAGAATAAATCCCTAGTTCTTTGCTCTTCATTA-CCATGATTTTTTCTCAT 27794 Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTT 131793 || ||||| || || || || ||||||| || || | ||| | || | ||| || Sbjct 27793 ATCTAAAATATCAAAGATATCGCCATGCCAAGGCTCTATATATATAGCGAATGCCCCCGG 27734 Query 131794 GCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGG 131850 || || ||| ||||||| |||| | | ||||||| | ||||| | ||| || Sbjct 27733 CCGTTTACCACCACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGCGGAGCATTGG 27674 Query 131851 CTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 |||| ||| | ||||| || ||||| Sbjct 27673 AACCAATCCGGAAGACTTTCCGTTTGTGCT 27644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924699942776