Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 102 7e-17
seq1180 95.1 1e-14
>seq1308
Length=6085
Score = 102 bits (112), Expect = 7e-17
Identities = 170/245 (69%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695
|| || ||||| || ||||||||||| ||||| || | |||||| || || | ||||
Sbjct 4614 CCATTTTGTTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCT 4673
Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755
|| ||| | | |||||| |||| | ||||| | | || | ||| || ||||| ||
Sbjct 4674 CTGGCTCTAATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCT 4733
Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTA 131812
| |||||| ||||| ||||| | || | || ||| | | ||||| |||||||
Sbjct 4734 GAATGCCATGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCG 4793
Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872
|||| ||| | |||||||| | || || | |||||| | |||||||| | |||
Sbjct 4794 ACATAACGTGCGGTGTTGTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCA 4853
Query 131873 TTGGT 131877
|| ||
Sbjct 4854 TTAGT 4858
>seq1180
Length=50914
Score = 95.1 bits (104), Expect = 1e-14
Identities = 185/270 (69%), Gaps = 5/270 (2%)
Strand=Plus/Minus
Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674
||| | | || |||||| | ||| | || |||||| |||| || ||||| ||||||
Sbjct 27912 GGAGAAAATAACGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAAATCAGGCACC 27853
Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAA 131733
||||| | || || | ||| |||| | ||| |||||| || |||| ||||||| |||
Sbjct 27852 CATAATCCATAGAATAAATCCCTAGTTCTTTGCTCTTCATTA-CCATGATTTTTTCTCAT 27794
Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTT 131793
|| ||||| || || || || ||||||| || || | ||| | || | ||| ||
Sbjct 27793 ATCTAAAATATCAAAGATATCGCCATGCCAAGGCTCTATATATATAGCGAATGCCCCCGG 27734
Query 131794 GCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGG 131850
|| || ||| ||||||| |||| | | ||||||| | ||||| | ||| ||
Sbjct 27733 CCGTTTACCACCACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGCGGAGCATTGG 27674
Query 131851 CTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880
|||| ||| | ||||| || |||||
Sbjct 27673 AACCAATCCGGAAGACTTTCCGTTTGTGCT 27644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424924699942776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |