Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1308 215 6e-51 seq1387 98.7 1e-15 seq1399 93.3 5e-14 seq1452 84.2 3e-11 >seq1308 Length=6085 Score = 215 bits (238), Expect = 6e-51 Identities = 865/1345 (64%), Gaps = 29/1345 (2%) Strand=Plus/Plus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 || ||||| || || |||||| || ||||||| || ||||||||||| |||||| Sbjct 3741 AATTCACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 3800 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 ||||||||||||||||||| || || || |||||||| || || | |||||| ||| Sbjct 3801 TTATTACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTT 3860 Query 110801 CGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTT 110856 | | || | || ||| || || || | | |||||| || || || || || Sbjct 3861 CTTAATCCATGCT--TTGCCATATTTTGTTTTAAAGTATCCCAATCCCATAATTCAG-TT 3917 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 ||||| |||| | | ||| | || | | ||||||||| || || ||||| | | | Sbjct 3918 GGTTTTCTATTCC-ATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAACCTTGATA 3976 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 110976 | || ||| | ||||| ||| || |||||| | || | | ||||| || Sbjct 3977 AGATTGATATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCGTGGTA 4036 Query 110977 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCG 111036 ||||||||||| || || ||| | || ||||||| | |||||||||| ||| Sbjct 4037 AATGGTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATG-GTAAT- 4094 Query 111037 GCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 | ||| || || |||| || | |||||| || |||||| |||| ||||| | | Sbjct 4095 -CTTAAAGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTATTTTT 4153 Query 111094 CATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 111152 |||||| || ||| || ||| ||| |||||| |||| | ||||| ||| |||| Sbjct 4154 CATATTTGAATTTTTGGCT-TCTGGAACAGGATAATAATTACGATCAATAACTTTATTTA 4212 Query 111153 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCG 111207 ||| ||||||||||| || |||||||| | ||| ||| ||| || | || Sbjct 4213 AATTACGAGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGAT 4272 Query 111208 AGTC-TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 || |||| | ||| || ||| | ||||||||| || ||||| || ||||| | Sbjct 4273 CATCATCTTTTTCAACAAACGCTGGTAAGGCGATTGAAGCTAAATTACAGACAGCAACTT 4332 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | || || || || | |||||| ||||||||| || ||||| | || | Sbjct 4333 CTTCAGGTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTA 4392 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 |||||||||| || |||| | || || ||||| || || | ||| | || || || | Sbjct 4393 AATTCTTTTGATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAG 4452 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGC-TGGTACAATGGCGTT 111444 | || || || | || | ||| | | ||| || | | | | | || || | | Sbjct 4453 TTTCAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAATAGTTTGTC--T 4510 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTC 111504 | || || || || || ||| || | |||||| || ||||| | || Sbjct 4511 ACCACGACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATC 4570 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 | | || || || | | || | || | | ||| | |||| || || || || Sbjct 4571 AGGTAATCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACG 4630 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 |||||| || | || |||||||| | | || || | |||||| | | ||||| Sbjct 4631 CTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTC 4690 Query 111625 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | |||||| || || | |||| || || | ||||| | |||||||| || | Sbjct 4691 TTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAA 4750 Query 111685 ATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGC 111741 ||||| || | || || || | ||| |||||| ||||| || || ||| Sbjct 4751 ATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTT 4810 Query 111742 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACG 111801 ||| || || || | ||| || |||||||| | || |||||| || || |||| Sbjct 4811 GTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATA 4870 Query 111802 AGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT 111861 || | | | | | || ||| || || | |||||||| ||||| | |||||| || Sbjct 4871 AGCCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAAT 4930 Query 111862 TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGAT 111921 ||||| | | ||| |||| || || | ||||| || || || |||| | Sbjct 4931 CAATGCACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAAC 4990 Query 111922 AAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 111981 | ||| || ||||| || || ||||| ||||| ||||| || | ||||||| | Sbjct 4991 TAAGAAACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACC 5050 Query 111982 GTGAATGAACATACCTTGGGACATC 112006 ||| |||| | ||| |||||| Sbjct 5051 ATGAGTGAAAAACTTTTGTGACATC 5075 >seq1387 Length=15432 Score = 98.7 bits (108), Expect = 1e-15 Identities = 331/508 (65%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||||| |||| | |||||||||||| || ||||||||| | || | ||| Sbjct 2514 CCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTGGCATTAACCCTCTTTTC 2573 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || ||||| |||| | | ||||| || ||||| ||||| || ||| ||||| Sbjct 2574 TTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATACCTTCAACAGCAGCAAAT 2633 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT-TGCATCA---AACCATTTCATTGCCCA 122852 |||| | | ||| || | |||||| | |||| | |||| | | |||||| Sbjct 2634 GCAACTAATCTTTCAGCATA----TAAGACTTCAGTATCAGTGATCCATCTTAATGCCCA 2689 Query 122853 TTTCGC-CTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTT 122911 | || ||||||| ||||| || | | || || || | |||||| | | || Sbjct 2690 ATCAGCTTTTCTTCT-GATACAAGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTT 2748 Query 122912 CAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT 122971 | | ||| ||||| || | ||||| || ||||| ||||| ||||| ||| Sbjct 2749 CCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCAGAATGAATATTTT 2808 Query 122972 CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAA 123031 || | |||| | | |||||||| ||||| || ||||| || | | || Sbjct 2809 CAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGAACTTCTGCTGAAA 2868 Query 123032 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGT 123091 |||| | | | | ||| ||| |||||| ||||| || ||||||||||||| | || Sbjct 2869 AATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAAGA--C 2926 Query 123092 ACTT--TATGAATTTCTTTTCATTTTCATTCAGGGTCT---TCCAGTCGTCAAGATCTTT 123146 ||| ||||| | |||||| ||||||| | | |||| || | | ||| || Sbjct 2927 TCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAATCATGTAAATCCTT 2986 Query 123147 GGACAAATCAACTTCTTCCGCAGTCCAA 123174 ||||||| |||||| ||||||||| Sbjct 2987 ACTTAAATCAATTTCTTCAGCAGTCCAA 3014 >seq1399 Length=19921 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| |||||||| || || || || | || || |||||||||||| |||||| Sbjct 12871 TATGGCCGTGTTGCCCCTCGTTCAGGATTGGCGGTTAAGCATGGTATTTCTACTGGTGCT 12930 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 || ||||||||| | || |||| ||||||||| ||||| || | || ||||| | || Sbjct 12931 GGAGTTATTGATGCTGATTATAGAGGTGAAGTTAAAGTTGTATTATTTAATCATAGTGAA 12990 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 164762 || || ||||| || ||| || || | || |||||| Sbjct 12991 AAGGATTTTGAAGTTAAGGTTGGTGAAAGAATTGCACAA 13029 >seq1452 Length=85594 Score = 84.2 bits (92), Expect = 3e-11 Identities = 219/331 (66%), Gaps = 21/331 (6%) Strand=Plus/Plus Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTC--TCATCATT 11592 ||||||| ||||||||||| | | |||||| | | || |||| | ||||| || Sbjct 56962 TGTCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAG--TGGTCTCACGTTCATCGTT 57019 Query 11593 TGCTGGCATACCACCAGCACTGCGTT---------GCTTGCCCACCGCATCAATCTCATC 11643 ||| ||||| ||| ||| || |||| || | |||||||| ||||| Sbjct 57020 TGC------ACCACTTGCATTGCCTTTGGCACGCAGCTTCCCAATTGCATCAATTTCATC 57073 Query 11644 AATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTT 11703 || |||||||| | || |||||| || || ||| || | || || || | Sbjct 57074 AACAAAGACAATCGAAGGGGCATTTTCACGAGCAGTTTTGAACAAGTCACGTACACGAGA 57133 Query 11704 GGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT-GAATGGGA 11762 ||||| ||||| |||||||| || || || | | |||| || | || ||| || | Sbjct 57134 TGCACCTACACCGACAAACATTTCGACGAATTCAGAACCAGA-AACAGAATAGAAAGGTA 57192 Query 11763 CATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCG 11822 | || |||||| || ||||| ||| || || ||||| || |||||||| || | Sbjct 57193 CCCCTGCTTCACCAGCAGTGGCTTTGGCAAGAAGAGTCTTACCAGTACCTGGAGGGCCAG 57252 Query 11823 CGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| || |||| ||||| |||||||| Sbjct 57253 AAAGAATTGCCCCTCTAGGGATTTTGGCACC 57283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017296200800