Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1308 190 2e-43 seq1452 102 1e-16 seq1180 102 1e-16 seq208 82.4 9e-11 >seq1308 Length=6085 Score = 190 bits (210), Expect = 2e-43 Identities = 898/1411 (64%), Gaps = 29/1411 (2%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGT--TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| ||||| |||| | ||||| | ||||| || ||||||||||| || || Sbjct 5158 GAAAGACCACA--ACATTTAATCATGAGAGTGGCAATTGGTATTCATGGTAGGGATATCC 5101 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 104333 | || | || | || | | |||||| ||| | |||| ||| | |||||| Sbjct 5100 CTCGAGTTATTGAATCTTATAATATGATGTCACAAAAGTTTTTCACTCATGGTTCACCAA 5041 Query 104334 CCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACA 104393 | | || ||||| ||||| ||||| || |||||||| || ||| | | |||| | Sbjct 5040 CTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATGTTTCTTAGTTGCCATGA 4981 Query 104394 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 104453 | || || ||||| | || || |||| ||| | | ||||| || |||||| Sbjct 4980 AAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTTCAAAGA 4921 Query 104454 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 | ||||| |||||||| | || || ||| || | | | | | || |||| | Sbjct 4920 GTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATATTGCTG 4861 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || |||||| || | |||||||| || ||| | || || || ||| ||| || | Sbjct 4860 GTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACACCGCAC 4801 Query 104574 GCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | ||||| |||||| ||| | || || || | || ||||| | || |||| Sbjct 4800 GTTATGTCGATCAAGGTGGTAATAAGAGACCAGGTGCTTTTGCCCTCTATTTAGAACCAT 4741 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| | ||||| | || || |||| | | || |||||| | || || Sbjct 4740 GGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAGAAGAAATTA 4681 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | | ||| | ||| | || | |||||||| ||| | || |||||| | || || Sbjct 4680 GAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGCGTGTGGAAC 4621 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 | | ||| ||||| | | |||| || | | || ||||| | | |||| | Sbjct 4620 AAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTGATGTTTATG 4561 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 |||| || |||||| | || ||| || || |||||||| | | || Sbjct 4560 GTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTAGACAAACTA 4501 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | | ||| | | ||| | | | ||||| || |||||||| |||| Sbjct 4500 TTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTGGTACTCCAT 4441 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||| | || ||||| || ||||| |||||| |||||||||||||| ||| | || | Sbjct 4440 TTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAGGTATTATTA 4381 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 | || || | ||| ||||| | |||| | || || || ||||| | Sbjct 4380 AATCATCTAACTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAAGTTGCTGTCT 4321 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-CATT---- 105105 |||| | || |||||||| | || || ||| || | ||| | || |||| Sbjct 4320 GTAATTTAGCTTCAATCGCCTTACCAGCGTTTGTTGAA--AAAGATGATGATCATTCATG 4263 Query 105106 ---TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | ||| ||| ||| | || ||| |||| || | ||| || || |||| | ||| Sbjct 4262 GTATAATTTTGATAAATTACATGAAATTACCAAGATTGTTACTCGTAATTTAAATAAAGT 4203 Query 105163 TATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||||| | |||| ||| || ||| ||| || || || ||||||| | | | | Sbjct 4202 TATTGATCGTAATTATTATCCTGTTCCAGAA-GCCAAAAATTCAAATATGAAAAATAGAC 4144 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 105280 |||||| | | || || || ||| | || |||| ||||| |||| || ||||| Sbjct 4143 CAATTGCTTTGGGGGTCCAAGGTTTGGCTGATGCTTTCATGGCTTTAAGATTAC-CATTT 4085 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 ||||| | ||||| | ||| | ||| | || ||||| ||||| || ||||| ||| Sbjct 4084 GATTCTCAAGAAGCCAGAGAATTAAATATTCAAATTTTTGAAACCATTTACCACGCTGCT 4025 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 |||| | | || || || | | || ||||||||| || | | | | ||||| Sbjct 4024 GTTGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCCATATCAATCTTATCAAGGTTCA 3965 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 105460 ||||| || |||||| | | |||| |||| | ||| | | | ||||| || | || Sbjct 3964 CCAGCATCCCAAGGGTTATTACAATATGATTTATGGAATAGAAA-ACCAA-CTGAATTAT 3907 Query 105461 G--ACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | | ||||| || | || || || ||| || | || | | ||| || | Sbjct 3906 GGGATTGGGATACTTTAAAACAAAATATGGCAA--AGCATGGATTAAGAAACTCACTTTT 3849 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | ||||| |||||||| || || || ||||||||||||||||||||||||| ||||| Sbjct 3848 GGTTGCTCCTATGCCAACTGCTTCAACATCACAAATCTTGGGTAATAATGAATGTTTTGA 3789 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGA 105607 ||| || || | ||||| ||| |||||| Sbjct 3788 ACCATATACTTCAAACATTTATTCCAGAAGA 3758 >seq1452 Length=85594 Score = 102 bits (112), Expect = 1e-16 Identities = 196/288 (68%), Gaps = 17/288 (6%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| |||||||| || | ||| || |||||||| || || Sbjct 56964 TCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGTTCATCGTTTGC- 57022 Query 9671 GGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAATG 9721 ||||| ||| ||| || |||| || | |||||||| ||||||| Sbjct 57023 -----ACCACTTGCATTGCCTTTGGCACGCAGCTTCCCAATTGCATCAATTTCATCAACA 57077 Query 9722 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 9781 ||||| || | || |||||| ||||| || || | || |||||||| || Sbjct 57078 AAGACAATCGAAGGGGCATTTTCACGAGCAGTTTTGAACAAGTCACGTACACGAGATGCA 57137 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATT 9840 || ||||| |||||||| || || || | | | ||| | | || ||| || || Sbjct 57138 CCTACACCGACAAACATTTCGACGAATTCAGAACCAGAA-ACAGAATAGAAAGGTACCCC 57196 Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | |||||| ||| ||||| ||| |||||||||||||| |||||||| Sbjct 57197 TGCTTCACCAGCAGTGGCTTTGGCAAGAAGAGTCTTACCAGTACCTGG 57244 >seq1180 Length=50914 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 |||| ||||| | | || ||||||||||||||| ||||| ||||||||||| || Sbjct 28022 TGGATGGCTATATTAGAATCCCAAACCGAGACTGGTGGCCCATATATGCTTTACAAGGAT 28081 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 || ||||| |||| ||||||||||||||||| || || ||| ||||||| | ||| Sbjct 28082 GCTTGTAATGAAAAATCAAATCAAAAGAATTTGGGGGTCATAAAGTCTTCCAATTTATGT 28141 Query 105008 ACAGAAATCTTGGAAT 105023 |||||| |||||| Sbjct 28142 TGTGAAATCATGGAAT 28157 >seq208 Length=13876 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/321 (67%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 9610 ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC 9669 ||||||||||||||| || ||| | |||||| | || | ||| ||||| ||||| | Sbjct 11857 ATCAAAACCATCCATTTCAACCAACAATTGGTTCAATGTATTTTCACGTTCGTCATTTCC 11798 Query 9670 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | || | ||| | | || | || | ||||||||| ||||||| ||| | || Sbjct 11797 TCCAATTCTTCCATTGCCTCTTTCTCTACCAATGGCATCAATTTCATCAACGAATATAAT 11738 Query 9730 GCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | || |||| ||||| | ||| || || || || ||||| || || || | Sbjct 11737 TGAAGGAGCCATTTCACGAGCTGTCTTGAATAAG-TCACGAACACGAGAAGCACCAACCC 11679 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCA 9847 | |||||||| ||||| || | || |||| ||| | | || || ||| | |||| Sbjct 11678 CTACAAACATTTCCACGAATTCTGAACCGGAGACACT-CAAAAATGGAACACCTGCTTCA 11620 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || ||||| || | ||| || ||||| |||||||| ||| | | | ||| Sbjct 11619 CCAGCGGTGGCTTTTGCCAAAAGTGTTTTACCAGTACCTGGAGGACCAGATAAAATTGCA 11560 Query 9908 CCTCGTGGAATCTTGGCGCCA 9928 |||| ||||| ||||| ||| Sbjct 11559 CCTCTAGGAATTTTGGCTCCA 11539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247144406520