Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1308 190 2e-43
seq1452 102 1e-16
seq1180 102 1e-16
seq208 82.4 9e-11
>seq1308
Length=6085
Score = 190 bits (210), Expect = 2e-43
Identities = 898/1411 (64%), Gaps = 29/1411 (2%)
Strand=Plus/Minus
Query 104216 GAAACCCCACAGTACATGT--TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273
|||| ||||| |||| | ||||| | ||||| || ||||||||||| || ||
Sbjct 5158 GAAAGACCACA--ACATTTAATCATGAGAGTGGCAATTGGTATTCATGGTAGGGATATCC 5101
Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 104333
| || | || | || | | |||||| ||| | |||| ||| | ||||||
Sbjct 5100 CTCGAGTTATTGAATCTTATAATATGATGTCACAAAAGTTTTTCACTCATGGTTCACCAA 5041
Query 104334 CCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACA 104393
| | || ||||| ||||| ||||| || |||||||| || ||| | | |||| |
Sbjct 5040 CTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATGTTTCTTAGTTGCCATGA 4981
Query 104394 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 104453
| || || ||||| | || || |||| ||| | | ||||| || ||||||
Sbjct 4980 AAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGATTTCAAAGA 4921
Query 104454 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513
| ||||| |||||||| | || || ||| || | | | | | || |||| |
Sbjct 4920 GTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCTTATATTGCTG 4861
Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573
| || |||||| || | |||||||| || ||| | || || || ||| ||| || |
Sbjct 4860 GTACTAATGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAACAACACCGCAC 4801
Query 104574 GCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630
| ||||| |||||| ||| | || || || | || ||||| | || ||||
Sbjct 4800 GTTATGTCGATCAAGGTGGTAATAAGAGACCAGGTGCTTTTGCCCTCTATTTAGAACCAT 4741
Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690
|||| | ||||| | || || |||| | | || |||||| | || ||
Sbjct 4740 GGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAGAAGAAATTA 4681
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | | ||| | ||| | || | |||||||| ||| | || |||||| | || ||
Sbjct 4680 GAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGCGTGTGGAAC 4621
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810
| | ||| ||||| | | |||| || | | || ||||| | | |||| |
Sbjct 4620 AAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCTGATGTTTATG 4561
Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870
|||| || |||||| | || ||| || || |||||||| | | ||
Sbjct 4560 GTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTAGACAAACTA 4501
Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930
| || | | ||| | | ||| | | | ||||| || |||||||| ||||
Sbjct 4500 TTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACTGGTACTCCAT 4441
Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990
||| | || ||||| || ||||| |||||| |||||||||||||| ||| | || |
Sbjct 4440 TTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTAGGTATTATTA 4381
Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050
| || || | ||| ||||| | |||| | || || || ||||| |
Sbjct 4380 AATCATCTAACTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAAGTTGCTGTCT 4321
Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-CATT---- 105105
|||| | || |||||||| | || || ||| || | ||| | || ||||
Sbjct 4320 GTAATTTAGCTTCAATCGCCTTACCAGCGTTTGTTGAA--AAAGATGATGATCATTCATG 4263
Query 105106 ---TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162
| ||| ||| ||| | || ||| |||| || | ||| || || |||| | |||
Sbjct 4262 GTATAATTTTGATAAATTACATGAAATTACCAAGATTGTTACTCGTAATTTAAATAAAGT 4203
Query 105163 TATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTC 105221
||||||| | |||| ||| || ||| ||| || || || ||||||| | | | |
Sbjct 4202 TATTGATCGTAATTATTATCCTGTTCCAGAA-GCCAAAAATTCAAATATGAAAAATAGAC 4144
Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 105280
|||||| | | || || || ||| | || |||| ||||| |||| || |||||
Sbjct 4143 CAATTGCTTTGGGGGTCCAAGGTTTGGCTGATGCTTTCATGGCTTTAAGATTAC-CATTT 4085
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
||||| | ||||| | ||| | ||| | || ||||| ||||| || ||||| |||
Sbjct 4084 GATTCTCAAGAAGCCAGAGAATTAAATATTCAAATTTTTGAAACCATTTACCACGCTGCT 4025
Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
|||| | | || || || | | || ||||||||| || | | | | |||||
Sbjct 4024 GTTGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCCATATCAATCTTATCAAGGTTCA 3965
Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 105460
||||| || |||||| | | |||| |||| | ||| | | | ||||| || | ||
Sbjct 3964 CCAGCATCCCAAGGGTTATTACAATATGATTTATGGAATAGAAA-ACCAA-CTGAATTAT 3907
Query 105461 G--ACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516
| | ||||| || | || || || ||| || | || | | ||| || |
Sbjct 3906 GGGATTGGGATACTTTAAAACAAAATATGGCAA--AGCATGGATTAAGAAACTCACTTTT 3849
Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576
| ||||| |||||||| || || || ||||||||||||||||||||||||| |||||
Sbjct 3848 GGTTGCTCCTATGCCAACTGCTTCAACATCACAAATCTTGGGTAATAATGAATGTTTTGA 3789
Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGA 105607
||| || || | ||||| ||| ||||||
Sbjct 3788 ACCATATACTTCAAACATTTATTCCAGAAGA 3758
>seq1452
Length=85594
Score = 102 bits (112), Expect = 1e-16
Identities = 196/288 (68%), Gaps = 17/288 (6%)
Strand=Plus/Plus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
||||||||||||||||| |||||||| || | ||| || |||||||| || ||
Sbjct 56964 TCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGTTCATCGTTTGC- 57022
Query 9671 GGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAATG 9721
||||| ||| ||| || |||| || | |||||||| |||||||
Sbjct 57023 -----ACCACTTGCATTGCCTTTGGCACGCAGCTTCCCAATTGCATCAATTTCATCAACA 57077
Query 9722 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 9781
||||| || | || |||||| ||||| || || | || |||||||| ||
Sbjct 57078 AAGACAATCGAAGGGGCATTTTCACGAGCAGTTTTGAACAAGTCACGTACACGAGATGCA 57137
Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATT 9840
|| ||||| |||||||| || || || | | | ||| | | || ||| || ||
Sbjct 57138 CCTACACCGACAAACATTTCGACGAATTCAGAACCAGAA-ACAGAATAGAAAGGTACCCC 57196
Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| |||||| ||| ||||| ||| |||||||||||||| ||||||||
Sbjct 57197 TGCTTCACCAGCAGTGGCTTTGGCAAGAAGAGTCTTACCAGTACCTGG 57244
>seq1180
Length=50914
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947
|||| ||||| | | || ||||||||||||||| ||||| ||||||||||| ||
Sbjct 28022 TGGATGGCTATATTAGAATCCCAAACCGAGACTGGTGGCCCATATATGCTTTACAAGGAT 28081
Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007
|| ||||| |||| ||||||||||||||||| || || ||| ||||||| | |||
Sbjct 28082 GCTTGTAATGAAAAATCAAATCAAAAGAATTTGGGGGTCATAAAGTCTTCCAATTTATGT 28141
Query 105008 ACAGAAATCTTGGAAT 105023
|||||| ||||||
Sbjct 28142 TGTGAAATCATGGAAT 28157
>seq208
Length=13876
Score = 82.4 bits (90), Expect = 9e-11
Identities = 214/321 (67%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 9610 ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC 9669
||||||||||||||| || ||| | |||||| | || | ||| ||||| ||||| |
Sbjct 11857 ATCAAAACCATCCATTTCAACCAACAATTGGTTCAATGTATTTTCACGTTCGTCATTTCC 11798
Query 9670 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729
| || | ||| | | || | || | ||||||||| ||||||| ||| | ||
Sbjct 11797 TCCAATTCTTCCATTGCCTCTTTCTCTACCAATGGCATCAATTTCATCAACGAATATAAT 11738
Query 9730 GCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
| || |||| ||||| | ||| || || || || ||||| || || || |
Sbjct 11737 TGAAGGAGCCATTTCACGAGCTGTCTTGAATAAG-TCACGAACACGAGAAGCACCAACCC 11679
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCA 9847
| |||||||| ||||| || | || |||| ||| | | || || ||| | ||||
Sbjct 11678 CTACAAACATTTCCACGAATTCTGAACCGGAGACACT-CAAAAATGGAACACCTGCTTCA 11620
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
|| || ||||| || | ||| || ||||| |||||||| ||| | | | |||
Sbjct 11619 CCAGCGGTGGCTTTTGCCAAAAGTGTTTTACCAGTACCTGGAGGACCAGATAAAATTGCA 11560
Query 9908 CCTCGTGGAATCTTGGCGCCA 9928
|||| ||||| ||||| |||
Sbjct 11559 CCTCTAGGAATTTTGGCTCCA 11539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583247144406520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |