Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1705 138 3e-27 seq1530 100 7e-16 >seq1705 Length=31738 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | || || || ||||||||||| || || | | || || || Sbjct 13712 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 13653 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || |||||||| | | |||||||||||| |||| |||||||| Sbjct 13652 ATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 13593 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| ||| || || || ||||||||||| |||||| || | || || Sbjct 13592 GTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAAT 13533 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | |||||||| Sbjct 13532 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494 >seq1530 Length=119309 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || || ||||||||||| || || | | || || |||||||| | || || || Sbjct 25163 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACC 25222 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | |||||||| || ||||||| |||||||| || ||||| || || Sbjct 25223 AGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTT 25282 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || |||||||| |||||| || | ||||| ||||| || || | || Sbjct 25283 GACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGT 25342 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | ||||| Sbjct 25343 CTTAACGAAAATTTGCAT 25360 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || | ||| || || ||||||||||| || || | | || || || Sbjct 24689 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACC 24748 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || | |||||||| || || || | |||||||| Sbjct 24749 ATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTT 24808 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || || || || || || |||||||| |||||| || | ||||| Sbjct 24809 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGAT 24868 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 24869 GGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || || ||||||||||| || || | | || || || Sbjct 25373 TCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 25432 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || || || || || | |||||||| || || |||| |||||||| Sbjct 25433 GTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 25492 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || || ||||| ||||| ||||| || ||| || || | || || Sbjct 25493 ATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAAT 25552 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| || || | |||||| Sbjct 25553 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATT 25589 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || || ||||||||||| || || | | || || || Sbjct 24917 TCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACC 24976 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || || || || || | |||||||| || || |||| |||||||| Sbjct 24977 GTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 25036 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || || || || || || |||||||| |||||| || | || || Sbjct 25037 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAAT 25096 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 25097 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159124182887645