Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1705 138 3e-27
seq1530 100 7e-16
>seq1705
Length=31738
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||||| ||| | ||| | || || || ||||||||||| || || | | || || ||
Sbjct 13712 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 13653
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||| | ||||| || |||||||| | | |||||||||||| |||| ||||||||
Sbjct 13652 ATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 13593
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| |||||||| ||| || || || ||||||||||| |||||| || | || ||
Sbjct 13592 GTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAAT 13533
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || | ||||| || || | ||||||||
Sbjct 13532 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494
>seq1530
Length=119309
Score = 100 bits (110), Expect = 7e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976
||| || || ||||||||||| || || | | || || |||||||| | || || ||
Sbjct 25163 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACC 25222
Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036
|| || || | |||||||| || ||||||| |||||||| || ||||| || ||
Sbjct 25223 AGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTT 25282
Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096
|| || || || |||||||| |||||| || | ||||| ||||| || || | ||
Sbjct 25283 GACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGT 25342
Query 211097 CTTTACAAACACCTGCAT 211114
||| || || | |||||
Sbjct 25343 CTTAACGAAAATTTGCAT 25360
Score = 96.9 bits (106), Expect = 8e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| | ||| | || | ||| || || ||||||||||| || || | | || || ||
Sbjct 24689 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACC 24748
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||| | || || || ||||| || | |||||||| || || || | ||||||||
Sbjct 24749 ATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTT 24808
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|| ||||| || || || || || || |||||||| |||||| || | |||||
Sbjct 24809 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGAT 24868
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || | ||||| || || | |||||
Sbjct 24869 GGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
Score = 95.1 bits (104), Expect = 3e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||||| || | || | ||| || || ||||||||||| || || | | || || ||
Sbjct 25373 TCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 25432
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||||| | || || || || || || | |||||||| || || |||| ||||||||
Sbjct 25433 GTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 25492
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|| ||||| || || ||||| ||||| ||||| || ||| || || | || ||
Sbjct 25493 ATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAAT 25552
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || || | |||||| || || | ||||||
Sbjct 25553 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATT 25589
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||||| || | || | ||| || || ||||||||||| || || | | || || ||
Sbjct 24917 TCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACC 24976
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||||| | || || || || || || | |||||||| || || |||| ||||||||
Sbjct 24977 GTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 25036
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|| ||||| || || || || || || |||||||| |||||| || | || ||
Sbjct 25037 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAAT 25096
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || | ||||| || || | |||||
Sbjct 25097 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159124182887645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |