Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 147 1e-30
>seq1530
Length=119309
Score = 147 bits (162), Expect = 1e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||| | || || || || || || | |||||||| || |
Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | |||| | || || |||||| | || ||||||||
Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATTCCACCAGATCA 25014
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||| || |||||| | ||||||| | || ||| ||| |||||
Sbjct 25013 ACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAA 24954
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| || || || ||||||||||||||||| ||| |||| ||
Sbjct 24953 CATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGG 24906
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||||||||| ||| | || || || || ||||| | |||||||| || |
Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | |||| | || || |||||| | || ||||||||
Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATTCCTCCAGATCA 25242
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||| || |||||| | ||||| | | || ||| || |||||
Sbjct 25241 ACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAA 25182
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| || || || |||||||||||||| || ||| |||| ||
Sbjct 25181 CATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGG 25134
Score = 134 bits (148), Expect = 9e-27
Identities = 178/242 (74%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 23599 TAATTAC-TTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656
||| ||| |||| |||||| |||||||| || || | || || || || || || | |
Sbjct 25602 TAACTACATTAACAATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAG 25543
Query 23657 AAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715
|||| || || | |||||| | || || |||| | |||| | || || ||||||
Sbjct 25542 AAGTAGAATCTTCCGACACTATCGATAACGTTAAGTCTAAAA-TCCAAGATAAGGAAGGT 25484
Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775
| || ||||||||||| ||||| || ||||| || |||||| | ||||||| | |||
Sbjct 25483 ATTCCACCAGATCAACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACT 25424
Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGA 23835
||| ||| |||||||| ||||| || || || ||||||||||| ||||| || ||||
Sbjct 25423 TTATCCGACTACAACATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGT 25364
Query 23836 GG 23837
||
Sbjct 25363 GG 25362
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||| | || || || || ||||| | |||||||| || |
Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | |||| | || || |||||| | || ||||||||
Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATCCCACCAGATCA 24786
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || || || || |||||| | ||||| | | || ||| || |||||
Sbjct 24785 ACAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAA 24726
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| || || || ||||||||||| || || || |||| ||
Sbjct 24725 CATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGG 24678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338001884191484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |