Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1530 147 1e-30 >seq1530 Length=119309 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || || || || || | |||||||| || | Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| | || || |||||| | || |||||||| Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATTCCACCAGATCA 25014 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | ||||||| | || ||| ||| ||||| Sbjct 25013 ACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAA 24954 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || ||||||||||||||||| ||| |||| || Sbjct 24953 CATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGG 24906 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||| | || || || || ||||| | |||||||| || | Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| | || || |||||| | || |||||||| Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATTCCTCCAGATCA 25242 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | ||||| | | || ||| || ||||| Sbjct 25241 ACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAA 25182 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || |||||||||||||| || ||| |||| || Sbjct 25181 CATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGG 25134 Score = 134 bits (148), Expect = 9e-27 Identities = 178/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 23599 TAATTAC-TTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 ||| ||| |||| |||||| |||||||| || || | || || || || || || | | Sbjct 25602 TAACTACATTAACAATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAG 25543 Query 23657 AAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 |||| || || | |||||| | || || |||| | |||| | || || |||||| Sbjct 25542 AAGTAGAATCTTCCGACACTATCGATAACGTTAAGTCTAAAA-TCCAAGATAAGGAAGGT 25484 Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 | || ||||||||||| ||||| || ||||| || |||||| | ||||||| | ||| Sbjct 25483 ATTCCACCAGATCAACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACT 25424 Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGA 23835 ||| ||| |||||||| ||||| || || || ||||||||||| ||||| || |||| Sbjct 25423 TTATCCGACTACAACATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGT 25364 Query 23836 GG 23837 || Sbjct 25363 GG 25362 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || || || ||||| | |||||||| || | Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| | || || |||||| | || |||||||| Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGTATCCCACCAGATCA 24786 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || |||||| | ||||| | | || ||| || ||||| Sbjct 24785 ACAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAA 24726 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || ||||||||||| || || || |||| || Sbjct 24725 CATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGG 24678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001884191484