Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1705 170 5e-37
seq1530 143 6e-29
seq635 107 5e-18
>seq1705
Length=31738
Score = 170 bits (188), Expect = 5e-37
Identities = 169/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| | ||| | ||| | || ||||| ||||||| ||||| || | |||||||| ||
Sbjct 13712 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 13653
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| ||||| ||||||||||| | || ||||||||| || ||||||||||||||
Sbjct 13652 ATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 13593
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || |||||||| || | ||| || ||||| || ||
Sbjct 13592 GTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAAT 13533
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | |||||||||
Sbjct 13532 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494
>seq1530
Length=119309
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||| ||||| ||||||| ||||| |||| |||||||| || ||||||| || || ||
Sbjct 25391 AGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACC 25450
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
||| || || | |||||||| || || |||||||||||||| |||||||| || |||
Sbjct 25451 AGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTT 25510
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| ||||| ||||| || | ||| || ||||| || || ||||| || || |||||
Sbjct 25511 AACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGT 25570
Query 225696 TTTTATGAACACTTGCATT 225714
|| | ||| | |||||||
Sbjct 25571 CTTGACGAAAATTTGCATT 25589
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | || | ||| ||||| ||||||| ||||| || | || ||||| ||
Sbjct 24689 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACC 24748
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| || || |||||||| || | |||||||| || || || |||||||||||
Sbjct 24749 ATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTT 24808
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||| || ||| ||| || || ||||| || | ||| || || || |||||
Sbjct 24809 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGAT 24868
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || || | ||| | ||||||
Sbjct 24869 GGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | || | ||| ||||| ||||||| ||||| || | || ||||| ||
Sbjct 25145 TCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACC 25204
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| || || ||||| || || | |||||||| || || ||||||||||||||
Sbjct 25205 ATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 25264
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||| || ||| ||| || || ||||| || | ||| || || || |||||
Sbjct 25265 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGAT 25324
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || || | ||| | ||||||
Sbjct 25325 GGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||| ||||| ||||||| ||||| |||| || ||||| || ||||||| || || ||
Sbjct 24935 AGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACC 24994
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
||| || || | |||||||| || || |||||||||||||| |||||||| || |||
Sbjct 24995 AGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTT 25054
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| || || ||||| || | ||| || || || || || ||||| || || || ||
Sbjct 25055 GACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGT 25114
Query 225696 TTTTATGAACACTTGCAT 225713
|| | ||| | ||||||
Sbjct 25115 CTTGACGAAAATTTGCAT 25132
>seq635
Length=15171
Score = 107 bits (118), Expect = 5e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||| ||||| || |||||||| || || |||||||| || ||||||||
Sbjct 5928 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCGGAGACATCACC 5869
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
|||| ||||||| ||| ||||| || |||| || |||||||| |||
Sbjct 5868 ACCTTGGGTTTCGATAACTGGTAAAGCGGTTAAAGAACCACCACCTAAA 5820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192502581859862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |