Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 367 1e-96
>seq1387
Length=15432
Score = 367 bits (406), Expect = 1e-96
Identities = 626/899 (70%), Gaps = 19/899 (2%)
Strand=Plus/Plus
Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306
||||||| ||||| || || || |||| |||||| || || |||||||| || ||||
Sbjct 2192 AACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAA 2251
Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTG--CGTTGTAA----TGTTTTTCACA 4360
||||||||||||||||| ||||| ||||| ||| | || ||| | || || ||
Sbjct 2252 TGAAATATTTTCCATAAAGTCAAATGGATT--TTGAACATTATAAACCTTCTTATTACCA 2309
Query 4361 CTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCA 4420
| || || | |||| ||| || |||||||| | ||| || | ||| | || ||
Sbjct 2310 ----AATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACA 2365
Query 4421 GTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTAC 4480
||| || || | ||| || || |||| || | || ||| | |||| ||| ||| ||
Sbjct 2366 GTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAAC 2425
Query 4481 GGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAA 4540
||||| || || | || | | ||| | |||| |||| || | ||||
Sbjct 2426 AGCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAA 2485
Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600
|||||||| ||||||||| ||| || ||||| ||||| | ||| | ||| || || ||
Sbjct 2486 TAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAA 2545
Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660
||||| || |||||||| ||||| || || | ||| || || | ||||||||| |||
Sbjct 2546 AGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACT 2605
Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720
|||||| || ||||| || || ||||| || ||||||| | | || | |
Sbjct 2606 AAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGT 2665
Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATA 4779
|| | |||||| |||||||||| | ||||||| | | | || ||||| ||| | |
Sbjct 2666 ATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGT-TCAA 2724
Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839
|||| |||||||| | | ||| ||| |||| ||||||||| || |||| |||
Sbjct 2725 TAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGG 2784
Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899
||| |||||||||| |||||||| || ||| ||||| || || || || ||||||
Sbjct 2785 AATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTT 2844
Query 4900 CTGTTACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958
||| | ||||||||| | | ||||| |||| | ||| ||||| || || ||||| |||
Sbjct 2845 CTGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTAAATTTTCATTAACAATACCATCA 2903
Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT- 5017
|| ||||| || || || || || || || || ||| ||| || | |||
Sbjct 2904 GATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTA 2963
Query 5018 --TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075
| |||| | | ||||| ||| ||||||||| ||||||| |||||||||| || |||
Sbjct 2964 TCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCT 3023
Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134
|| ||||| ||||| | |||||| ||| |||| ||| |||| || ||||||||
Sbjct 3024 TCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCT 3082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427039851658709
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |