Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1387 367 1e-96 >seq1387 Length=15432 Score = 367 bits (406), Expect = 1e-96 Identities = 626/899 (70%), Gaps = 19/899 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||| || || || |||| |||||| || || |||||||| || |||| Sbjct 2192 AACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAA 2251 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTG--CGTTGTAA----TGTTTTTCACA 4360 ||||||||||||||||| ||||| ||||| ||| | || ||| | || || || Sbjct 2252 TGAAATATTTTCCATAAAGTCAAATGGATT--TTGAACATTATAAACCTTCTTATTACCA 2309 Query 4361 CTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCA 4420 | || || | |||| ||| || |||||||| | ||| || | ||| | || || Sbjct 2310 ----AATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACA 2365 Query 4421 GTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTAC 4480 ||| || || | ||| || || |||| || | || ||| | |||| ||| ||| || Sbjct 2366 GTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAAC 2425 Query 4481 GGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAA 4540 ||||| || || | || | | ||| | |||| |||| || | |||| Sbjct 2426 AGCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAA 2485 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 |||||||| ||||||||| ||| || ||||| ||||| | ||| | ||| || || || Sbjct 2486 TAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAA 2545 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 ||||| || |||||||| ||||| || || | ||| || || | ||||||||| ||| Sbjct 2546 AGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACT 2605 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 |||||| || ||||| || || ||||| || ||||||| | | || | | Sbjct 2606 AAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGT 2665 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATA 4779 || | |||||| |||||||||| | ||||||| | | | || ||||| ||| | | Sbjct 2666 ATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGT-TCAA 2724 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 |||| |||||||| | | ||| ||| |||| ||||||||| || |||| ||| Sbjct 2725 TAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGG 2784 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 ||| |||||||||| |||||||| || ||| ||||| || || || || |||||| Sbjct 2785 AATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTT 2844 Query 4900 CTGTTACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 ||| | ||||||||| | | ||||| |||| | ||| ||||| || || ||||| ||| Sbjct 2845 CTGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTAAATTTTCATTAACAATACCATCA 2903 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT- 5017 || ||||| || || || || || || || || ||| ||| || | ||| Sbjct 2904 GATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTA 2963 Query 5018 --TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 | |||| | | ||||| ||| ||||||||| ||||||| |||||||||| || ||| Sbjct 2964 TCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCT 3023 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || ||||| ||||| | |||||| ||| |||| ||| |||| || |||||||| Sbjct 3024 TCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCT 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039851658709