Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1308 609 3e-169 seq1387 376 4e-99 >seq1308 Length=6085 Score = 609 bits (674), Expect = 3e-169 Identities = 1518/2284 (66%), Gaps = 37/2284 (2%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||| | || || ||||| | || || || | || || | || ||| ||||||||| Sbjct 3381 TTATCAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAATACATACCA 3440 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 || || | ||| |||| |||||||||||||| || || | ||| | || Sbjct 3441 GTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTTGGG 3500 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || ||||| ||||||| || ||| |||||| ||||| ||| |||||||||| ||| Sbjct 3501 TCCTTAATATGGATATTCAAAGATTGAGATTGATCAATGAATGCTGCTCTATCAGCAGCC 3560 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 || | ||||| ||||||| ||||||||| | || || | | ||| || ||| Sbjct 3561 ATATCAATAATATGTTTTTGAGAAATTTCCCATACTGTCTTATATAAGGCTTTAATTTCA 3620 Query 75608 TCTGGAAGATTTG-TATT--TTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 || || | ||| | || | ||||||||| || || || ||||| || | || | Sbjct 3621 TCAGGGATATTAGGTAATGATTGAATGGACCCATTATTTGAAATAATACTACTTTTAACG 3680 Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724 | |||||||| | | || |||| |||| | | | |||||||||||||| Sbjct 3681 GCTTCATTCCAAATACCTAAATCAACTAAATCTCTTAATAAAAATGGATTAACAATTTGG 3740 Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 ||||| |||| | ||||||| | ||||| || ||||||||||| | | ||||| Sbjct 3741 AATTCACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 3800 Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844 || || ||||| ||||| | ||||||||||| |||||||| || ||||| | ||| Sbjct 3801 TTATTACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTT 3860 Query 75845 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 || | ||||| || || || | ||||| | | ||||||||| | || | |||| Sbjct 3861 CTTAATCCATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCATAATTCAGTTGGT 3920 Query 75905 ACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTT 75964 || ||| | ||| ||||||| | || | | || ||| || | ||| | | Sbjct 3921 TTTCTATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAACCTTGATAAGAT 3980 Query 75965 TCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATT 76024 | || | || || | || |||| ||| | | || | ||| ||| ||||| Sbjct 3981 TGATATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCGTGGTAAATG 4040 Query 76025 GTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA 76084 ||||| ||||| | |||| | ||| ||||| || |||||| || |||| | || Sbjct 4041 GTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTTAA 4099 Query 76085 AGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 || || || ||||| || | || || || || | | |||| ||||||| | || |||| Sbjct 4100 AGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTATTTTTCATATT 4159 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 ||| ||| |||||||||| ||| ||||||||| ||| |||| |||||| | ||| | Sbjct 4160 TGAATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTATTTAAATTACG 4219 Query 76204 GACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-------AATTTTC--CATC 76254 ||| | || | || | || ||| ||||| | ||| || |||| Sbjct 4220 AGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCATCATC 4279 Query 76255 TATC---ACAAACA-TATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 | | |||||| | |||| || || || |||| |||||| || || || || | || Sbjct 4280 TTTTTCAACAAACGCTGGTAAG-GCGATTGAAGCTAAATTACAGACAGCAACTTCTTCAG 4338 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||||| | || || |||| ||| | || ||| | || | ||| | Sbjct 4339 GTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCT 4398 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 ||| ||| |||||| ||||| | || ||||| | | ||| ||||| ||||||||| Sbjct 4399 TTTGATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAG 4458 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATT-TGTATCGC 76489 | || | ||| | ||| || | ||| | | || || || || || | || | | Sbjct 4459 TTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAAT---AGTTTGTCTACCAC 4515 Query 76490 TTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 | || | |||||||| | |||||| |||||||||| || || |||||||| | Sbjct 4516 GACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATCAGGTA 4575 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCA 76607 | |||||| |||||| || | | |||| ||| ||||||| || | || || |||| Sbjct 4576 ATCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACGCTTCA 4635 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTC 76667 |||| | |||||| ||||||| || |||| ||||| || |||| |||||| || | Sbjct 4636 TAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTAC 4695 Query 76668 CTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 76727 || ||| ||| ||| ||| | || || | |||||| |||||||||||||||| ||| | Sbjct 4696 CTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGA 4755 Query 76728 TCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTAT 76787 || | | |||| |||| |||||||| || ||||| | ||| | || ||||| || Sbjct 4756 GGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTTGTTGA 4815 Query 76788 AAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTC 76847 |||| | | ||| || ||||| ||||| || |||||||| || |||| ||||||| | Sbjct 4816 AAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCC 4875 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 || | |||||||||| |||| || || || || || || | || || || | | Sbjct 4876 CAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATG 4935 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 |||| |||||| || ||||| || || || || |||||| ||||| || | | Sbjct 4936 CACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGA 4995 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 |||| |||||||| || || || |||||||| || || || || |||||| Sbjct 4996 AACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAG 5055 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 |||| | |||| || | | ||| || | |||||||||| ||||||| || Sbjct 5056 TGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGGATATCCCTACCAT 5115 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 |||| || | || || | ||| | | ||| || |||| ||| || ||| ||| | Sbjct 5116 GAATACCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATTAA 5175 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 77205 | | || || || ||| |||| ||||||||||| |||||||| || || ||||| || Sbjct 5176 CTCTTAATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATAATTATAATTGAAA--TC 5233 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGAC 77265 | ||||||| |||| | ||||||| || || || || || ||||| ||| | Sbjct 5234 ACGATCGTAAACAATAGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT-CATAAG 5292 Query 77266 AGT-GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGT 77324 | | ||||| || ||||| || | | | || || |||||||| | | |||| | Sbjct 5293 TCTCCTTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCATATAATT 5352 Query 77325 CTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTC 77384 ||| | || | | || |||| | |||| || |||| ||| ||||| || |||| Sbjct 5353 CTTTACTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTAGATACAGCAATTC 5412 Query 77385 TAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGT-GGCTGCTATTTCTGCC 77443 ||||||||| ||| ||||| |||||||| || || || | || || |||| || Sbjct 5413 TAGCAGCTAAAATGGCATAATCAGGATGAATAGTGGT-CATATAAGCAGCAGTTTCGGCA 5471 Query 77444 GCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAAT--AACTTTCA 77501 ||||| |||||||||| | || || || || | ||| | || ||| |||| | Sbjct 5472 GCTAAGTTATCTAATTCAACCGTGGTTACACCATGATAAACACCAGAAATGGTTCTTTGA 5531 Query 77502 TGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATAC 77561 | || || | ||| ||| | || | || || ||||||||| || || | Sbjct 5532 --GTAATGGCGACGGCATCAACATGGTTGGGATCTAATCCGTAACATAATCTTTGAACTC 5589 Query 77562 GAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCATTTCGTTTAATGACGAACA 77621 || ||||||||||| || ||| ||||||| |||| || |||| ||| ||| Sbjct 5590 TAGCAGTGATTTTATCGAAACGAACAGGTTCCTTACGACCATCTCTTTTATAAACGTACA 5649 Query 77622 TCGT 77625 | || Sbjct 5650 TGGT 5653 >seq1387 Length=15432 Score = 376 bits (416), Expect = 4e-99 Identities = 627/905 (69%), Gaps = 6/905 (1%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||||| || ||| || | || || ||||| |||||||| || | Sbjct 2189 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGC 2248 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 ||||| |||||||||||||| ||||| ||||| ||||||||||| || ||| || Sbjct 2249 TAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACC 2308 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 ||| | | | ||| || ||||| ||||| | ||| ||||| || ||| || Sbjct 2309 AAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTT 2368 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| |||| | | || |||| || || || | | | |||| ||||||| ||||| Sbjct 2369 CATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGC 2428 Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACAT 46625 || || ||| | || |||| | |||| || ||||||| ||| | Sbjct 2429 TTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAATAA 2488 Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 |||||| ||||||||| ||| | ||||||||||||| ||||||||| || || || || Sbjct 2489 TAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGT 2548 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | || ||||||| || | || || | ||| || || | || || |||||| ||| Sbjct 2549 TAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAA 2608 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||| || ||||| ||||| || ||||| || | ||| || | || | | ||| ||| Sbjct 2609 GAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTATC 2668 Query 46806 A---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| ||| ||||||||||| ||| | | | |||||| || ||| ||||| Sbjct 2669 AGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGC 2728 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 |||||| | | | ||| | |||||||| ||| ||||| |||||||| ||| Sbjct 2729 ATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATA 2788 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||| |||||||| |||||||| || ||||| || || || || | ||||| | Sbjct 2789 AGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGG 2848 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 ||| || || |||| |||| |||| ||||| ||||| || || |||||| || Sbjct 2849 AATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGC 2908 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT---T 47099 |||||| ||||| || || | ||| |||||| ||||||| | ||| ||||| | Sbjct 2909 AGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCT 2968 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| |||| | ||| || || ||| | ||||||||| ||||| ||||| || ||||| Sbjct 2969 CCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGC 3028 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||| || || | | ||| || ||| ||||| || ||||| |||||||||||| ||| Sbjct 3029 TTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCTACGTGG 3088 Query 47220 ATTTT 47224 ||||| Sbjct 3089 ATTTT 3093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917708423360