Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1705 122 2e-22 seq1530 104 5e-17 >seq1705 Length=31738 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || |||||||||||||| || | ||||||||| |||||||||| || || Sbjct 13693 GTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCA 13634 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | || || ||||| | | || |||||||| ||||| || || |||| Sbjct 13633 GCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTG 13574 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | |||| ||| || ||||| | |||||||| || || || | ||| Sbjct 13573 ACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTC 13514 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||||| Sbjct 13513 TTGACGAAAATTTGCATTTT 13494 >seq1530 Length=119309 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| || |||||||||||||| |||| ||||||||| || ||||||| Sbjct 25385 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTG 25444 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | || || || | | || |||||||| ||||| ||||| Sbjct 25445 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTT 25504 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | |||| ||| |||||||| | |||||||| || || || Sbjct 25505 AGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGT 25564 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | |||||| ||||| | |||||| Sbjct 25565 TAAAGTCTTGACGAAAATTTGCATT 25589 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||| | |||||| || |||||||||||||| || | ||| ||||| || Sbjct 24689 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACC 24748 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || ||||| || | | || || || | | ||| |||||||| Sbjct 24749 ATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTT 24808 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| |||||| | || | |||| ||| || ||||| | || || Sbjct 24809 ATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGAT 24868 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||| ||||| | ||||| Sbjct 24869 GGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| || |||||||||||||| |||| ||| ||||| || ||||||| Sbjct 24929 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTG 24988 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | || || || | | || |||||||| ||||| ||||| Sbjct 24989 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTT 25048 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | |||| ||| || ||||| | ||||| || || || || Sbjct 25049 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGT 25108 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| | ||||| Sbjct 25109 TAAGGTCTTGACGAAAATTTGCAT 25132 Score = 89.7 bits (98), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| || |||||||||||||| || | ||| ||||| |||||||||| Sbjct 25157 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTG 25216 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | || || || | | || |||||||| ||||| ||||| Sbjct 25217 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTT 25276 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | |||| ||| || ||||| | || || || || || || Sbjct 25277 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGT 25336 Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 | ||||| ||||| | ||||| ||| |||| ||| Sbjct 25337 TAAGGTCTTAACGAAAATTTGCATACCACCTCTTAATCT 25375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153793110824783