Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1530 167 5e-36 seq1705 159 7e-34 >seq1530 Length=119309 Score = 167 bits (184), Expect = 5e-36 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || ||| ||||||||||||||||| | | || | || || |||| ||| Sbjct 25385 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTG 25444 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| |||||||||||||| || |||||||| ||||| |||||||| || Sbjct 25445 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTT 25504 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || ||| ||||||||||||| |||| ||| ||||| | || || |||||||| || Sbjct 25505 AGACTTAACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGT 25564 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 |||||||| ||||| || |||||| Sbjct 25565 TAAAGTCTTGACGAAAATTTGCATT 25589 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || ||| ||||||||||||||||||| | || | ||||| |||| ||| Sbjct 25157 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTG 25216 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| |||||||||||||| || |||||||| ||||| |||||||| || Sbjct 25217 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTT 25276 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || | || |||||||| |||| ||| ||||| | ||||| |||||||| || Sbjct 25277 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGT 25336 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| || ||||| Sbjct 25337 TAAGGTCTTAACGAAAATTTGCAT 25360 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || ||| ||||||||||||||||||| | || | ||||| |||| ||| Sbjct 24701 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTG 24760 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || || || |||||||||||||| || || ||||| ||||| |||||||| || Sbjct 24761 TTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTATCTTGGATTTT 24820 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || | || |||||||| |||| ||| ||||| | ||||| |||||||| || Sbjct 24821 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGT 24880 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||| Sbjct 24881 TAAGGTCTTGACGAAAATTTGCAT 24904 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || ||| ||||||||||||||||| | | || | || || |||| ||| Sbjct 24929 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTG 24988 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| |||||||||||||| || |||||||| ||||| |||||||| || Sbjct 24989 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTT 25048 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || | || |||||||| |||| ||| ||||| | || || |||||||| || Sbjct 25049 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGT 25108 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||| Sbjct 25109 TAAGGTCTTGACGAAAATTTGCAT 25132 >seq1705 Length=31738 Score = 159 bits (176), Expect = 7e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || ||| ||||||||||||||||||| | || | ||||| |||| ||| Sbjct 13699 TGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGC 13640 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||| || | |||||||||| |||||||| ||||||||||||||||| Sbjct 13639 TTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 13580 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||| || | || || ||||| |||| ||| ||||| | || || |||||||| || Sbjct 13579 GATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTT 13520 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| || |||||||| Sbjct 13519 AAGGTCTTGACGAAAATTTGCATTTT 13494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046714080548942