Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1387 398 8e-106 >seq1387 Length=15432 Score = 398 bits (440), Expect = 8e-106 Identities = 635/903 (70%), Gaps = 19/903 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| |||||||| || ||| | |||| ||||| || || ||||| | Sbjct 2189 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGC 2248 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 |||||| |||||||||||||| ||||||||||| | |||||| || ||| || | Sbjct 2249 TAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAAC--CTTCTTATTA 2306 Query 23325 T--AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 ||| | ||| | || || || |||||||||| ||||||||||||||| | | || Sbjct 2307 CCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAG 2366 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442 || ||||||| || | ||||| | |||||| || || ||||||||| |||| Sbjct 2367 TTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACA 2426 Query 23443 GCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAAC 23502 || || ||| || | | | | |||| | ||| || || |||| ||| Sbjct 2427 GCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAAT 2486 Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 |||||||| ||||||||| ||||| |||||||| |||| ||| |||||||| || || Sbjct 2487 AATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAA 2546 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 ||||| ||||||||||| |||| ||| || | ||| || |||| ||||||||||| | Sbjct 2547 GTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTA 2606 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAA 23682 ||||||||||| |||||||| ||||| || || | | | | || || | | | | Sbjct 2607 AAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTA 2666 Query 23683 TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATT 23742 |||| |||||| || || ||||| ||| || | | | ||| ||| |||||| Sbjct 2667 TCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATA 2726 Query 23743 GCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAA 23799 || || || | || | |||| || |||| | ||||| |||||||||| | Sbjct 2727 GCATTAAATAAGTAA---TCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGG 2783 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||| |||||||||||||||||||||| ||| ||||||||||| || || ||||| Sbjct 2784 GAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCT 2843 Query 23860 TCAGACAATTGAACATC-ATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 || | | |||||| || | |||||| ||| | ||||||||| |||||||||||||| Sbjct 2844 TCTGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTAAATTTTCATTAACAATACCATC 2902 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT--AAT 23976 | ||||||||||| || | || | || |||| |||||||||| | || ||| Sbjct 2903 AGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCA--TCATTCAAT 2960 Query 23977 TT---TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 || | ||||||||| | ||| || |||||||| ||| ||| | |||||||| | Sbjct 2961 TTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGAT 3020 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAAT 24093 || || ||| || | | ||||||| |||| || | |||||||| || || ||| Sbjct 3021 GCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAAT 3080 Query 24094 CTA 24096 ||| Sbjct 3081 CTA 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521475790662200