Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1530 105 5e-18 >seq1530 Length=119309 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| || || | || | || ||||||||||||||||| Sbjct 24899 TTGCATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 24958 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| | | | |||| || | || || || ||||| |||||||| || ||||| Sbjct 24959 GTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATC 25018 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 || || | ||||||||| || || || ||| || ||| | || ||||| | Sbjct 25019 TGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAA 25076 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 25077 GATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 102 bits (112), Expect = 6e-17 Identities = 174/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| | ||| ||||| | || | || ||||||||||||||||| Sbjct 25355 TTGCATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25414 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| |||| | |||| || | || || || ||||| |||||||| || ||| Sbjct 25415 GTCGGATAAAGTT--CTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGA 25472 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| || | ||||||||| || || || ||| || ||| | || ||||||| Sbjct 25473 TCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTT-AACGTTATCGATAGTGTCGGA 25531 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| || || | ||||| ||||| || || | ||||| ||||| |||||||| | Sbjct 25532 AGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT--T 25589 Query 44341 GTGAATG 44347 || |||| Sbjct 25590 GTTAATG 25596 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | || | || ||||||||||||||||| Sbjct 25127 TTGCATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25186 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | | | || || | || || || ||||| |||||||| || ||||| Sbjct 25187 GTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATC 25246 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 || ||| | ||||||||| || || || ||| || ||| | || ||||| | Sbjct 25247 TGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAA 25304 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 25305 GATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| | |||||| || | || | || ||||||||||||||||| || | Sbjct 24678 CCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 24737 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | | | || || | || || || || || |||||||| || ||||||| || Sbjct 24738 AATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 24797 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||||||||| || || || ||| || ||| | || ||||| | ||||| | Sbjct 24798 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAAGATTCAA 24855 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 24856 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982182431641