Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 105 5e-18
>seq1530
Length=119309
Score = 105 bits (116), Expect = 5e-18
Identities = 166/236 (70%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| ||| || || | || | || |||||||||||||||||
Sbjct 24899 TTGCATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 24958
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| | | | |||| || | || || || ||||| |||||||| || |||||
Sbjct 24959 GTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATC 25018
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
|| || | ||||||||| || || || ||| || ||| | || ||||| |
Sbjct 25019 TGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAA 25076
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || |||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 25077 GATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Score = 102 bits (112), Expect = 6e-17
Identities = 174/247 (70%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||| | ||| ||||| | || | || |||||||||||||||||
Sbjct 25355 TTGCATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25414
Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|||| |||| | |||| || | || || || ||||| |||||||| || |||
Sbjct 25415 GTCGGATAAAGTT--CTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGA 25472
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280
|||| || | ||||||||| || || || ||| || ||| | || |||||||
Sbjct 25473 TCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTT-AACGTTATCGATAGTGTCGGA 25531
Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
||||| || || | ||||| ||||| || || | ||||| ||||| |||||||| |
Sbjct 25532 AGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT--T 25589
Query 44341 GTGAATG 44347
|| ||||
Sbjct 25590 GTTAATG 25596
Score = 100 bits (110), Expect = 2e-16
Identities = 165/236 (70%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| |||||| || | || | || |||||||||||||||||
Sbjct 25127 TTGCATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25186
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | | | | | || || | || || || ||||| |||||||| || |||||
Sbjct 25187 GTCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATC 25246
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
|| ||| | ||||||||| || || || ||| || ||| | || ||||| |
Sbjct 25247 TGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAA 25304
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || |||| || || ||||| || || | |||||| ||||| ||||||||
Sbjct 25305 GATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| ||||| | |||||| || | || | || ||||||||||||||||| || |
Sbjct 24678 CCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 24737
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
| | | | || || | || || || || || |||||||| || ||||||| ||
Sbjct 24738 AATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 24797
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||||||||| || || || ||| || ||| | || ||||| | ||||| |
Sbjct 24798 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGT--CAATAGTGTCAGAAGATTCAA 24855
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||| || || ||||| || || | |||||| ||||| ||||||||
Sbjct 24856 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359982182431641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |