Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1705 116 9e-21 seq1530 107 5e-18 >seq1705 Length=31738 Score = 116 bits (128), Expect = 9e-21 Identities = 148/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || | || || || || || ||| | || || ||| Sbjct 13494 AAAATGC---AAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAA 13550 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| || || |||||| ||||| || ||||| ||||| || || || Sbjct 13551 TCTTCTGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCT 13610 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||| || | |||||||| || || || | |||||||| || ||| | | || Sbjct 13611 GACCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGAC 13670 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 || ||| ||||||| ||||| || Sbjct 13671 TACAACATCCAAAAGGAATCTAC 13693 >seq1530 Length=119309 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || |||||| | || || ||| || ||| Sbjct 24901 CAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCTGAC 24842 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || || || ||||| ||||| || || || ||| Sbjct 24841 ACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAACAA 24782 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| | |||||||| || || | | || || ||| || Sbjct 24781 CGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAACATC 24722 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || | ||| | || |||||| | ||| Sbjct 24721 CAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGA 24683 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || |||||| | || || ||| || ||| Sbjct 25357 CAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCTGAC 25298 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || || || ||||| || ||||| || || ||| Sbjct 25297 ACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAACAA 25238 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || | | || || ||| || Sbjct 25237 CGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAACATC 25178 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || | ||| | ||||||||| | ||| Sbjct 25177 CAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGA 25139 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||| | || || ||| || ||| Sbjct 25585 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCTTCCGAC 25526 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || || || ||||| || || || || || ||| Sbjct 25525 ACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAACAA 25466 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || || ||| | |||| || ||| || Sbjct 25465 CGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTACAACATC 25406 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || | ||| | || || ||| | ||| Sbjct 25405 CAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGA 25367 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || ||| | || || ||| || ||| Sbjct 25129 CAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCTGAC 25070 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || || || ||||| || || || || || ||| Sbjct 25069 ACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAACAA 25010 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || || || | |||| || ||| || Sbjct 25009 CGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAACATC 24950 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || | ||| | ||||| ||| | ||| Sbjct 24949 CAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGA 24911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203702313084362