Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq46 192 6e-44 >seq46 Length=215403 Score = 192 bits (212), Expect = 6e-44 Identities = 572/874 (65%), Gaps = 15/874 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| ||||| ||| | |||||||| ||||| || || || ||| || || || | Sbjct 149140 TTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTT 149199 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||||||||| |||||||| | || ||| || | | |||| | | | | | Sbjct 149200 CCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCTT-ATTACCAAA-TGCTACTAA 149257 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||||||| || |||||||| | ||||| |||||||| | |||||||| |||| | Sbjct 149258 TAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAACAA 149317 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || || | || || || || ||| | || ||| |||| || || |||||| Sbjct 149318 ACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATAAT 149377 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | ||| ||| | | ||| ||| || | ||| || | | ||| || || Sbjct 149378 CTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGCAAA 149437 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| |||||| || || ||||| | ||| | |||||| || ||||| || || ||||| Sbjct 149438 ATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGGCAT 149497 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 |||| |||||||||||||| || | ||||| || ||| ||||| ||||| || Sbjct 149498 TAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACCTTC 149557 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || | || || || | ||||| ||| || | || || | || |||||| | Sbjct 149558 AACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATCCATCT 149617 Query 17152 CTGCACCCACTCGG----CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | |||| || | |||| | | ||| ||| || | || || || || || | Sbjct 149618 AAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAAT--ATGG--TCAATAGCATTGAACA 149673 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 | | || ||||| | | || | ||||| || ||||| | ||| || |||| | Sbjct 149674 AATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTCAG 149733 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 | || ||||| ||||| || || || || || ||| | |||||| | ||||||| Sbjct 149734 AATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGAA 149793 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 |||| | |||| ||| | | |||||| || ||||| || || || || || | Sbjct 149794 CTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAGA 149853 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTC-CGGTGTAA--GAACGCGCCAGTCCT 17444 |||| | || |||||| | |||||| | ||| | | ||| || | Sbjct 149854 ACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTCCAATCGT 149913 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 |||||||||| || ||| | |||||||| ||||| ||| ||| | |||||||| | Sbjct 149914 TTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTGT 149973 Query 17505 ACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | | | |||||| |||| | || || ||||| Sbjct 149974 AAAATTGCCAAATTTCATGGAATCTAATTGGGAA 150007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543685081280