Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq46 176 5e-39 >seq46 Length=215403 Score = 176 bits (194), Expect = 5e-39 Identities = 563/859 (66%), Gaps = 17/859 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| |||||| ||| | |||||||||||||| || || || |||| || || |||| Sbjct 149140 TTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTT 149199 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TG-AAAATATCTTAGAGTACCCCA-GTTCCGTA 16027 |||| |||||||| |||||||| | || ||| |||| | |||| | | | | || Sbjct 149200 CCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCTT--ATTACCAAATGCTAC-TA 149256 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATA 16087 | ||||||||| || |||||||| | |||||||||||||| | || || || |||| Sbjct 149257 A-TAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | | || || | || | || || |||| | ||| || |||| || || ||| Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375 Query 16148 ATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || | | | | | | ||| ||| ||| | | || || | || ||| || Sbjct 149376 ATCT-TTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGC 149434 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || ||||| ||||| ||||| | ||| | ||||||||| || ||||| || || Sbjct 149435 AAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGG 149494 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 |||| |||| ||||||||||| || || | || ||||| || ||||| ||||| Sbjct 149495 CATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACC 149554 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 ||||||| || || || | ||||| ||| || | || || | | ||||| Sbjct 149555 TTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATCCA 149614 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 | | | |||| || || || | | | ||||| || || || || || ||||| Sbjct 149615 TCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAACAA 149674 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCT 16504 | || ||||| ||| | ||||| || || || | ||| | || |||| Sbjct 149675 ATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTA--AAAGGGAATAAGTTTCA 149732 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 || || ||||| || || || || || ||||||||| | || || | ||||| Sbjct 149733 GAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGA 149792 Query 16565 ACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624 ||||| | | || ||| ||| || ||||| |||||||| || |||||||| Sbjct 149793 ACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAG 149852 Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAA--GAATATGCCAATCT 16681 ||||| | || |||||| | |||||| || ||| | | |||||| Sbjct 149853 AACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTCCAATCG 149912 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 ||||||||||| || ||| | |||||| | ||||| || ||| | |||||||| Sbjct 149913 TTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTG 149972 Query 16742 TACATTTTCCAAATATCAT 16760 || | || |||||| |||| Sbjct 149973 TAAAATTGCCAAATTTCAT 149991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412507766720