Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq46 176 5e-39
>seq46
Length=215403
Score = 176 bits (194), Expect = 5e-39
Identities = 563/859 (66%), Gaps = 17/859 (2%)
Strand=Plus/Plus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971
|||| |||||| ||| | |||||||||||||| || || || |||| || || ||||
Sbjct 149140 TTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTT 149199
Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TG-AAAATATCTTAGAGTACCCCA-GTTCCGTA 16027
|||| |||||||| |||||||| | || ||| |||| | |||| | | | | ||
Sbjct 149200 CCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCTT--ATTACCAAATGCTAC-TA 149256
Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATA 16087
| ||||||||| || |||||||| | |||||||||||||| | || || || ||||
Sbjct 149257 A-TAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315
Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147
| | || || | || | || || |||| | ||| || |||| || || |||
Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375
Query 16148 ATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206
|| | | | | | | ||| ||| ||| | | || || | || ||| ||
Sbjct 149376 ATCT-TTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGC 149434
Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266
|| || ||||| ||||| ||||| | ||| | ||||||||| || ||||| || ||
Sbjct 149435 AAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGG 149494
Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326
|||| |||| ||||||||||| || || | || ||||| || ||||| |||||
Sbjct 149495 CATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACC 149554
Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386
||||||| || || || | ||||| ||| || | || || | | |||||
Sbjct 149555 TTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATCCA 149614
Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446
| | | |||| || || || | | | ||||| || || || || || |||||
Sbjct 149615 TCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAACAA 149674
Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCT 16504
| || ||||| ||| | ||||| || || || | ||| | || ||||
Sbjct 149675 ATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTA--AAAGGGAATAAGTTTCA 149732
Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564
|| || ||||| || || || || || ||||||||| | || || | |||||
Sbjct 149733 GAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGA 149792
Query 16565 ACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624
||||| | | || ||| ||| || ||||| |||||||| || ||||||||
Sbjct 149793 ACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAG 149852
Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAA--GAATATGCCAATCT 16681
||||| | || |||||| | |||||| || ||| | | ||||||
Sbjct 149853 AACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTCCAATCG 149912
Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741
||||||||||| || ||| | |||||| | ||||| || ||| | ||||||||
Sbjct 149913 TTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTG 149972
Query 16742 TACATTTTCCAAATATCAT 16760
|| | || |||||| ||||
Sbjct 149973 TAAAATTGCCAAATTTCAT 149991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511412507766720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |