Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq276 129 4e-25 >seq276 Length=61907 Score = 129 bits (142), Expect = 4e-25 Identities = 276/405 (68%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 ||||||||||||| || |||||||| || || | ||||||||| || || | Sbjct 8623 ACATAAAATTGACAAAAGACATGACATGGTGGGAGTGCCATTTTAGCAAAATCAGGTGGG 8682 Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 ||||||||| |||| | || |||||||| || || || |||| | | || | Sbjct 8683 TTCCAAGCAGACATGATAATTCTTCTATCATATGGATTCGTCTTTAATTTCTTTATAACA 8742 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GC-GCCCAA--CACCTTTATATTC 102042 | || |||||| ||| ||||| || ||||||| || | ||| ||| |||||| Sbjct 8743 TCTTGTAATTGATCATATCCTTGACCGGTATAATCAGCATCACAATCCAC----ATATTC 8798 Query 102043 TGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC 102102 || || ||||| ||||| || || ||||| || || || | ||| |||||| | | Sbjct 8799 AGCACCAAAATGTCTCCATTGGAAACCATAAACCGGACCTAAATCACCTTCACGACGATG 8858 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 | || || | |||||| ||| || | ||||| || | |||||||| | |||||| Sbjct 8859 AGTCAATCCTAATTTATCCAAATATTCACGTGATCCGTTACCTTCCCAAATTTTCACGCC 8918 Query 102163 --AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCA 102220 | || | | | ||||| ||||| || || ||||||||||| ||||| | | Sbjct 8919 TTTGTCACTCAAAAGT-TTTGC-ATCAGTTGAACCAGCTATAAACCACAAGAGTTCATGA 8976 Query 102221 ACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 | | |||| | | ||||||||||| ||||| ||||| || ||| Sbjct 8977 ATGATACCTTTTGAGAATACTCTCTTGGTAGTCAAAAGGGGGAAT 9021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101684 GCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGC 101743 |||||||| ||||||| ||| | ||||| || || |||||||| ||||| || ||| Sbjct 8383 GCATCAATATGATCTAAATACACATGAGCGTCACCCATAGTATGAATAAATTCACCACAA 8442 Query 101744 ACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAAT 101803 | | || ||||| |||||||| ||||| | | ||| ||| || |||||| Sbjct 8443 TCCATATCGACTACATGGGCAATCATCTTGGTTAATAATGCATATGAAGCGATATTAAAT 8502 Query 101804 GGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840 || || || | ||||||||| |||||||||||||| Sbjct 8503 GGAACGCCAAGTCCCATATCACATGATCTTTGATACA 8539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249896786296