Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq254 123 2e-23 seq253 96.9 3e-15 >seq254 Length=76587 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 |||||||||||| ||| |||| || || || || || ||||||||| ||| ||| | Sbjct 43144 AAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATC 43085 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | | || |||| || || ||||| |||||| | || || Sbjct 43084 TTCCGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGA 43025 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||||||| | |||||||| || || ||||| |||||| | |||| | | || || Sbjct 43024 TCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTA 42965 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || ||||||||||||||| | ||| |||| ||| ||||| |||| || Sbjct 42964 CAACATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGG 42914 >seq253 Length=293773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| || || || || || |||||| ||| ||| | | Sbjct 106759 AATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATCTTC 106700 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | |||| |||||| ||||| |||||| | || ||||| Sbjct 106699 TGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCA 106640 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || |||||||| |||||| | |||| | | || ||||| Sbjct 106639 ACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 106580 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||| | || |||| ||| |||| |||| || Sbjct 106579 CATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106532 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| |||||| | || ||||||||| | | ||||| || || ||| Sbjct 106446 AAAATTCAAGATAAGGAAGGTATCCCACCTGATCAACAACGTTTAATCTTCGCTGGTAAA 106387 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| | |||| | | || ||||| || ||||||||||||||| | || Sbjct 106386 CAATTAGAAGATGGTAGAACTTTATCTGACTACAACATCCAAAAGGAATCTACTTTACAT 106327 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| ||| |||| |||| || Sbjct 106326 TTGGTTTTAAGATTGAGAGGTGG 106304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410795318050544