Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq253 167 4e-36 seq276 163 4e-35 seq254 140 5e-28 >seq253 Length=293773 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124534 ATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 ||||||||||||| || | || || |||| || || ||||| || |||| ||||| Sbjct 106763 ATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAAT 106704 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | ||| || ||| ||| | ||| |||||||||||||| |||||||| ||||||| Sbjct 106703 CTTCTGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTG 106644 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||||||| | | || || || || ||||||||||| ||| || |||| ||| || | Sbjct 106643 ATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACT 106584 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||| ||||| ||||| |||||||||||| | || |||||||||| Sbjct 106583 ACAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGTAT 106529 Score = 163 bits (180), Expect = 4e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || ||| |||| ||||| | | Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||||||||| |||||||| |||||||||||| Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||||||||| ||| || |||| ||| || || || Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106351 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||||| |||||||||||| | || |||||||||| Sbjct 106350 ATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGTAT 106301 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || ||| |||| ||||| | | Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||||||||| |||||||| |||||||| ||| Sbjct 106242 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATTCCACCTGACCAA 106183 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||||||||| ||| || |||| ||| || || || Sbjct 106182 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106123 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| || ||||| || || || | ||| |||||||| Sbjct 106122 ATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGGT 106075 >seq276 Length=61907 Score = 163 bits (180), Expect = 4e-35 Identities = 282/407 (69%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| |||||| |||||| | |||||| ||||| | |||| || ||| ||| || Sbjct 8623 ACATAAAATTG-ACAAAAGACATGACATGGTGGGAGTGCCATTTTAGCAAAATCAGGTGG 8681 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 ||||| || | | || || ||||| | || || | |||| ||| ||||||| Sbjct 8682 GTTCCAAGCAGACATGATAATTCTTCTATCATATGGATTCGTCTTTAATTTCTTTATAAC 8741 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 || | |||||||||| |||||||| ||||||| | ||| ||| | ||||| ||| Sbjct 8742 ATCTTGTAATTGATCATATCCTTGACCGGTATAATCAGCATCACAATCCACATATTCAGC 8801 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||||||||| | |||||| ||||||||||| ||||||||||||||||| | || | | Sbjct 8802 ACCAAAATGTCTCCATTGGAAACCATAAACCGGACCTAAATCACCTTCACGACGATGAGT 8861 Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttt 205859 || || ||| | | ||||| |||||| || | |||||||| | | ||||| Sbjct 8862 CAATCCTAATTTATCCAAATATTCACGTGATCCGTTACCTTCCCAAATTTTCACGCCTTT 8921 Query 205860 attttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAAT 205919 | | | || |||| || |||||| |||| ||||||||| || | ||| | || || Sbjct 8922 GTCACTCAAAAGTTTTGCATCAGTTGAACCAGCTATAAACCACAAGAGTTCATGAATGAT 8981 Query 205920 TCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 ||| | | || | | || || || || | || |||| ||||| Sbjct 8982 ACCTTTTGAGAATACTCTCTTGGTAGTCAAAAGGGGGAATGTATCAT 9028 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 205320 TTTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATT 205379 ||| || ||||||| || ||| | ||||| | | | ||||||| || ||| ||| Sbjct 8328 TTTAATCATTAATTTAGGGAATTGTTTTGGAGCTCTTGAAAATTGTTCCTTCAATGCATC 8387 Query 205380 AATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAA 205439 |||||||| | ||| | ||| || | ||| ||| |||||||||||||| | | Sbjct 8388 AATATGATCTAAATACACATGAGCGTCACCCATAGTATGAATAAATTCACCACAATCCAT 8447 Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499 || || ||| |||||||| | || ||||| ||| ||| | ||||||||| || Sbjct 8448 ATCGACTACATGGGCAATCATCTTGGTTAATAATGCATATGAAGCGATATTAAATGGAAC 8507 Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACA 205531 || | ||||||||| |||||||||||||| Sbjct 8508 GCCAAGTCCCATATCACATGATCTTTGATACA 8539 >seq254 Length=76587 Score = 140 bits (154), Expect = 5e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| |||| || || || || || |||| | ||| | Sbjct 43141 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCTTC 43082 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || |||||||| |||||||| ||||||||||| Sbjct 43081 CGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGATCA 43022 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || || |||||||| ||| || |||| ||| || || || Sbjct 43021 ACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTACAA 42962 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| ||||| || ||||| ||| | ||| |||||||| ||| || Sbjct 42961 CATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGGTGGTAAGAA 42905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453204812800