Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq253 167 4e-36
seq276 163 4e-35
seq254 140 5e-28
>seq253
Length=293773
Score = 167 bits (184), Expect = 4e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 124534 ATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593
||||||||||||| || | || || |||| || || ||||| || |||| |||||
Sbjct 106763 ATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAAT 106704
Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653
| ||| || ||| ||| | ||| |||||||||||||| |||||||| |||||||
Sbjct 106703 CTTCTGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTG 106644
Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713
|||||||| | | || || || || ||||||||||| ||| || |||| ||| || |
Sbjct 106643 ATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACT 106584
Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || || ||||| ||||| ||||| |||||||||||| | || ||||||||||
Sbjct 106583 ACAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGTAT 106529
Score = 163 bits (180), Expect = 4e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || || || || ||| |||| ||||| | |
Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| |||||||||||||| |||||||| ||||||||||||
Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || || || || ||||||||||| ||| || |||| ||| || || ||
Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106351
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||||| |||||||||||| | || ||||||||||
Sbjct 106350 ATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGTAT 106301
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || || || || ||| |||| ||||| | |
Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| |||||||||||||| |||||||| |||||||| |||
Sbjct 106242 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATTCCACCTGACCAA 106183
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || || || || ||||||||||| ||| || |||| ||| || || ||
Sbjct 106182 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106123
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| ||||| ||||| || ||||| || || || | ||| ||||||||
Sbjct 106122 ATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGGT 106075
>seq276
Length=61907
Score = 163 bits (180), Expect = 4e-35
Identities = 282/407 (69%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619
|||| |||||| |||||| | |||||| ||||| | |||| || ||| ||| ||
Sbjct 8623 ACATAAAATTG-ACAAAAGACATGACATGGTGGGAGTGCCATTTTAGCAAAATCAGGTGG 8681
Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679
||||| || | | || || ||||| | || || | |||| ||| |||||||
Sbjct 8682 GTTCCAAGCAGACATGATAATTCTTCTATCATATGGATTCGTCTTTAATTTCTTTATAAC 8741
Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739
|| | |||||||||| |||||||| ||||||| | ||| ||| | ||||| |||
Sbjct 8742 ATCTTGTAATTGATCATATCCTTGACCGGTATAATCAGCATCACAATCCACATATTCAGC 8801
Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799
||||||||| | |||||| ||||||||||| ||||||||||||||||| | || | |
Sbjct 8802 ACCAAAATGTCTCCATTGGAAACCATAAACCGGACCTAAATCACCTTCACGACGATGAGT 8861
Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttt 205859
|| || ||| | | ||||| |||||| || | |||||||| | | |||||
Sbjct 8862 CAATCCTAATTTATCCAAATATTCACGTGATCCGTTACCTTCCCAAATTTTCACGCCTTT 8921
Query 205860 attttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAAT 205919
| | | || |||| || |||||| |||| ||||||||| || | ||| | || ||
Sbjct 8922 GTCACTCAAAAGTTTTGCATCAGTTGAACCAGCTATAAACCACAAGAGTTCATGAATGAT 8981
Query 205920 TCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966
||| | | || | | || || || || | || |||| |||||
Sbjct 8982 ACCTTTTGAGAATACTCTCTTGGTAGTCAAAAGGGGGAATGTATCAT 9028
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 205320 TTTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATT 205379
||| || ||||||| || ||| | ||||| | | | ||||||| || ||| |||
Sbjct 8328 TTTAATCATTAATTTAGGGAATTGTTTTGGAGCTCTTGAAAATTGTTCCTTCAATGCATC 8387
Query 205380 AATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAA 205439
|||||||| | ||| | ||| || | ||| ||| |||||||||||||| | |
Sbjct 8388 AATATGATCTAAATACACATGAGCGTCACCCATAGTATGAATAAATTCACCACAATCCAT 8447
Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499
|| || ||| |||||||| | || ||||| ||| ||| | ||||||||| ||
Sbjct 8448 ATCGACTACATGGGCAATCATCTTGGTTAATAATGCATATGAAGCGATATTAAATGGAAC 8507
Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACA 205531
|| | ||||||||| ||||||||||||||
Sbjct 8508 GCCAAGTCCCATATCACATGATCTTTGATACA 8539
>seq254
Length=76587
Score = 140 bits (154), Expect = 5e-28
Identities = 173/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| |||| || || || || || |||| | ||| |
Sbjct 43141 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCTTC 43082
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | ||| || || |||||||| |||||||| |||||||||||
Sbjct 43081 CGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGATCA 43022
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||| | || ||||| || || |||||||| ||| || |||| ||| || || ||
Sbjct 43021 ACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTACAA 42962
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||| ||||| || ||||| ||| | ||| |||||||| ||| ||
Sbjct 42961 CATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGGTGGTAAGAA 42905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755453204812800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |