Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq254 131 2e-25 seq253 129 9e-25 >seq254 Length=76587 Score = 131 bits (144), Expect = 2e-25 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| ||||| |||||||||||||| || || || || || || Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| |||||||| || |||||||| || |||||||| ||||| || ||| Sbjct 42974 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 43033 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| || || ||| ||| ||| Sbjct 43034 ATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 43093 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| || || || ||||| ||||| || || | ||| ||||||||||| Sbjct 43094 TCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 >seq253 Length=293773 Score = 129 bits (142), Expect = 9e-25 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| |||||||||||||||||||| || || || || || || Sbjct 106532 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106591 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| ||||| || || || | ||| ||||| || || Sbjct 106592 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGG 106651 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| || || ||| ||| ||| Sbjct 106652 ATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACT 106711 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTAT 146282 |||| || || || ||||| ||||| ||||||| ||| ||||||||| ||| Sbjct 106712 TCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTAT 106763 Score = 125 bits (138), Expect = 1e-23 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| |||||||||||||||||||| || || || || || || Sbjct 106304 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106363 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| ||||| || || || | ||| ||||| || || Sbjct 106364 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGG 106423 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||| || ||| ||| ||| Sbjct 106424 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106483 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || || ||||| ||||| || |||| ||| |||||||| Sbjct 106484 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || || |||||||| || || || || || || Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| ||||| || || || | ||| || || || ||| Sbjct 106136 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGA 106195 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||| || ||| ||| ||| Sbjct 106196 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106255 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || || ||||| ||||| || |||| ||| |||||||| Sbjct 106256 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743523648952320