Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq46 282 4e-71 >seq46 Length=215403 Score = 282 bits (312), Expect = 4e-71 Identities = 588/863 (68%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||| |||||||||||| ||||| || || || || |||||||||| ||| Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATC-CCAATTCCAAC-A 16061 ||||| |||||||| ||||| | ||| | | || || |||| | | || | Sbjct 149199 TCCATGAAATCAAATGGATTAGTG--ACATTGTAAACCTTCTTATTACCAAATGCTACTA 149256 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 |||||||||| || |||||||| | || || |||||| | ||||||||| |||| | Sbjct 149257 ATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAACA 149316 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | ||||||| | || || || || || | ||||| ||| ||| || |||| || | Sbjct 149317 AACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATAA 149376 Query 16182 TATCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTAAACATTATAC 16235 | ||| | || || || | || ||| || | || || || | || || Sbjct 149377 T----CTT--TTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAAC 149430 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 ||||||||||| ||| || ||||| || |||| ||||| ||||| || ||||| | || Sbjct 149431 AAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAAC 149490 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||||| |||| || || | |||||| || | || ||||||||| ||||| | Sbjct 149491 CAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAA 149550 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC--GTACG--TTCTAtttttactt 16411 |||||||||| || || |||||||| |||| ||| | || | ||| || | || Sbjct 149551 TACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTC-ATCGT--CTG 149607 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 | |||||| | |||||| | || || | | ||| ||| || | || || ||| Sbjct 149608 T-GATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCA 149666 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || || ||||| | ||| || ||| |||||||| || |||| | ||| Sbjct 149667 TTGAACAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAA 149726 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 |||| |||||||| || ||||| || || |||||||| ||| | | ||||| | Sbjct 149727 GTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGA 149786 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 ||||| ||||||| | || |||| | || ||||| ||||| || ||||| ||| Sbjct 149787 ATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCA 149846 Query 16652 GCAAAAAACGCAAGTATGTGTTTAAT---AAAAtttttttCGTTATCTGAAAGTTTTAAC 16708 ||||| |||||||| || ||| ||| || |||| || | | ||| | Sbjct 149847 GCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTC 149906 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 || || |||||||| |||||||| ||||| ||||||| |||||||| ||||| Sbjct 149907 CAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCC 149966 Query 16769 TTTTTATACATTTTCCATATGTC 16791 ||||| || | || ||| || || Sbjct 149967 TTTTTGTAAAATTGCCAAATTTC 149989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510288705600