Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq46 282 4e-71
>seq46
Length=215403
Score = 282 bits (312), Expect = 4e-71
Identities = 588/863 (68%), Gaps = 27/863 (3%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| ||| |||||||||||| ||||| || || || || |||||||||| |||
Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATC-CCAATTCCAAC-A 16061
||||| |||||||| ||||| | ||| | | || || |||| | | || |
Sbjct 149199 TCCATGAAATCAAATGGATTAGTG--ACATTGTAAACCTTCTTATTACCAAATGCTACTA 149256
Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121
|||||||||| || |||||||| | || || |||||| | ||||||||| |||| |
Sbjct 149257 ATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAACA 149316
Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181
| ||||||| | || || || || || | ||||| ||| ||| || |||| || |
Sbjct 149317 AACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATAA 149376
Query 16182 TATCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTAAACATTATAC 16235
| ||| | || || || | || ||| || | || || || | || ||
Sbjct 149377 T----CTT--TTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAAC 149430
Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295
||||||||||| ||| || ||||| || |||| ||||| ||||| || ||||| | ||
Sbjct 149431 AAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAAC 149490
Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355
| ||||||| |||| || || | |||||| || | || ||||||||| ||||| |
Sbjct 149491 CAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAA 149550
Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC--GTACG--TTCTAtttttactt 16411
|||||||||| || || |||||||| |||| ||| | || | ||| || | ||
Sbjct 149551 TACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTC-ATCGT--CTG 149607
Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471
| |||||| | |||||| | || || | | ||| ||| || | || || |||
Sbjct 149608 T-GATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCA 149666
Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531
|| || ||||| | ||| || ||| |||||||| || |||| | |||
Sbjct 149667 TTGAACAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAA 149726
Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591
|||| |||||||| || ||||| || || |||||||| ||| | | ||||| |
Sbjct 149727 GTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGA 149786
Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651
||||| ||||||| | || |||| | || ||||| ||||| || ||||| |||
Sbjct 149787 ATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCA 149846
Query 16652 GCAAAAAACGCAAGTATGTGTTTAAT---AAAAtttttttCGTTATCTGAAAGTTTTAAC 16708
||||| |||||||| || ||| ||| || |||| || | | ||| |
Sbjct 149847 GCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTC 149906
Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768
|| || |||||||| |||||||| ||||| ||||||| |||||||| |||||
Sbjct 149907 CAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCC 149966
Query 16769 TTTTTATACATTTTCCATATGTC 16791
||||| || | || ||| || ||
Sbjct 149967 TTTTTGTAAAATTGCCAAATTTC 149989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462510288705600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |