Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq46 342 5e-89
>seq46
Length=215403
Score = 342 bits (378), Expect = 5e-89
Identities = 647/938 (69%), Gaps = 27/938 (3%)
Strand=Plus/Plus
Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954
|||| ||||| || |||||||| ||| |||||| ||||| |||||||| || |||
Sbjct 149121 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTA 149180
Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATC 14013
|| | | ||| || |||||||| |||||||||||||| || ||||| | || || |
Sbjct 149181 CCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATTAGT-GACATTGTAAACCTTCTT 149239
Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073
| ||| | | ||| || ||||||||| |||| || |||| |||||| ||||||| |
Sbjct 149240 ATTACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTT 149299
Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133
||| |||||||||| | | ||||| | || || || ||||| ||||| ||||
Sbjct 149300 ACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGC 149359
Query 14134 CACAGCCTCGTTTATAATAATCGT---AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190
|||||||| | ||||||| | ||||||||| || || || || | |||
Sbjct 149360 AACAGCCTCA---ACAATAATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATG 149416
Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250
|| | |||||| ||||||||| ||| | || |||||||||| || | ||||||
Sbjct 149417 GGAGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTT 149476
Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310
|| |||||||| || ||||| || |||| || ||||||||||| || | ||||||||
Sbjct 149477 GGAGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGA 149536
Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370
|| ||||| || || ||||| ||||| || || | ||||| ||| |||| | ||
Sbjct 149537 ACCACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGC 149596
Query 14371 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430
|| | || | |||||| | |||||| |||| || ||| ||||| | ||
Sbjct 149597 TTCATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATG 149656
Query 14431 TTCAATAGCATTAAATAAATGTTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAAT 14487
||||||||||| || |||| || |||| |||| | | |||| || || || || ||
Sbjct 149657 GTCAATAGCATTGAACAAATAGTCGGCTTC-CTTTGGATCCTTG--ATATAAGTGTCGAT 149713
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
| | | ||| ||||||| || ||||||||||| || || |||||||| || |
Sbjct 149714 TAAAAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGA 149773
Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607
| ||||||| ||| || || | | || |||| |||||||||||||||| ||
Sbjct 149774 CTTGGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGAT 149833
Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA---TTGCTCTTCATT 14664
|||||| ||| ||||| || || | || | ||| ||| | || || |||||
Sbjct 149834 ACCATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATT 149893
Query 14665 GCTGAGT--TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14722
| | | ||| |||||||| |||||| ||| | ||| | ||| || | |||||
Sbjct 149894 --TAATTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAG 149951
Query 14723 AAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14782
||| ||| |||| ||||| || | | ||| ||||| | || || || || |
Sbjct 149952 AAAGAAGCTTCAGCCTTTTTGTAAAATTGCCAAATTTCATGGAATCTAATTGGGAACATG 150011
Query 14783 ACAAATCTTGAAGATGTTT---CTTTAAGAATTGGTTC 14817
||||| | || || | || ||||||| ||||||||
Sbjct 150012 ACAAAAC--GACGAGGGTTCTCCTTTAAG-ATTGGTTC 150046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482343815321280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |