Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq46 342 5e-89 >seq46 Length=215403 Score = 342 bits (378), Expect = 5e-89 Identities = 647/938 (69%), Gaps = 27/938 (3%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 |||| ||||| || |||||||| ||| |||||| ||||| |||||||| || ||| Sbjct 149121 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTA 149180 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATC 14013 || | | ||| || |||||||| |||||||||||||| || ||||| | || || | Sbjct 149181 CCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATTAGT-GACATTGTAAACCTTCTT 149239 Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073 | ||| | | ||| || ||||||||| |||| || |||| |||||| ||||||| | Sbjct 149240 ATTACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTT 149299 Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133 ||| |||||||||| | | ||||| | || || || ||||| ||||| |||| Sbjct 149300 ACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGC 149359 Query 14134 CACAGCCTCGTTTATAATAATCGT---AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190 |||||||| | ||||||| | ||||||||| || || || || | ||| Sbjct 149360 AACAGCCTCA---ACAATAATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATG 149416 Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250 || | |||||| ||||||||| ||| | || |||||||||| || | |||||| Sbjct 149417 GGAGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTT 149476 Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310 || |||||||| || ||||| || |||| || ||||||||||| || | |||||||| Sbjct 149477 GGAGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGA 149536 Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || ||||| || || ||||| ||||| || || | ||||| ||| |||| | || Sbjct 149537 ACCACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGC 149596 Query 14371 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430 || | || | |||||| | |||||| |||| || ||| ||||| | || Sbjct 149597 TTCATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATG 149656 Query 14431 TTCAATAGCATTAAATAAATGTTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAAT 14487 ||||||||||| || |||| || |||| |||| | | |||| || || || || || Sbjct 149657 GTCAATAGCATTGAACAAATAGTCGGCTTC-CTTTGGATCCTTG--ATATAAGTGTCGAT 149713 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 | | | ||| ||||||| || ||||||||||| || || |||||||| || | Sbjct 149714 TAAAAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGA 149773 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||| ||| || || | | || |||| |||||||||||||||| || Sbjct 149774 CTTGGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGAT 149833 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA---TTGCTCTTCATT 14664 |||||| ||| ||||| || || | || | ||| ||| | || || ||||| Sbjct 149834 ACCATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATT 149893 Query 14665 GCTGAGT--TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14722 | | | ||| |||||||| |||||| ||| | ||| | ||| || | ||||| Sbjct 149894 --TAATTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAG 149951 Query 14723 AAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14782 ||| ||| |||| ||||| || | | ||| ||||| | || || || || | Sbjct 149952 AAAGAAGCTTCAGCCTTTTTGTAAAATTGCCAAATTTCATGGAATCTAATTGGGAACATG 150011 Query 14783 ACAAATCTTGAAGATGTTT---CTTTAAGAATTGGTTC 14817 ||||| | || || | || ||||||| |||||||| Sbjct 150012 ACAAAAC--GACGAGGGTTCTCCTTTAAG-ATTGGTTC 150046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343815321280