Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq276 89.7 7e-13 seq245 89.7 7e-13 >seq276 Length=61907 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 104403 TGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATATTGGGTG 104462 ||||||||| || |||||||||| || |||||||||| ||||| | ||| | | || Sbjct 8844 TGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGTGGATTG 8785 Query 104463 CGATAATAAATATGGTGGT-----ATA-GATCAACTCAAAAATATTATTACAACAATTCA 104516 ||| | | ||| ||| ||| |||||| | || || |||| | | |||| | Sbjct 8784 TGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGATGTTATAAAGA-AATTAA 8726 Query 104517 AAATGAA-CCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTA 104575 | | ||| || | ||||||||||| || | | |||||||||||| ||| | ||| Sbjct 8725 AGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGATTTTGCTA 8666 Query 104576 AAATGGCACTTCCTCCTTGTCAT 104598 |||||||||| || || |||||| Sbjct 8665 AAATGGCACTCCCACCATGTCAT 8643 >seq245 Length=85806 Score = 89.7 bits (98), Expect = 7e-13 Identities = 122/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 73950 AATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATG--- 74006 ||| | |||||||||||||||||||| || ||||||| || | ||| | | || || Sbjct 3280 AATCGTCAACCTACTTTACATAAAGCTTCTATGATGGGTCATAAAGTCAGAGTTTTGCCT 3339 Query 74007 GATGTAAAAACCTTTAAATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGAT 74066 | || |||||| || | ||| || |||| ||| | |||||||| ||||| ||| Sbjct 3340 GGTGAAAAAACATTAAGATTACATTATGCAAATACTGGTGCTTATAATGCTGATTTCGAT 3399 Query 74067 GGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAAGTAAAGCTGA 74116 || |||||||||||| ||| |||||| ||| | ||||||||| Sbjct 3400 GGTGATGAAATGAATATGCATTTCCCTCAAAATGAAAATGCTAAAGCTGA 3449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679811884686720