Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq254 100 2e-16 seq253 87.8 1e-12 >seq254 Length=76587 Score = 100 bits (110), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| | || ||||| ||||| ||||||||||| | | ||| ||| || Sbjct 42928 TAAG-ACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCAT 42986 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| ||||| || || ||| |||| | |||||||||||| || | |||||||||| Sbjct 42987 CTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTAT 43046 Query 18232 C--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 | || || | | ||||| | ||| ||||| | ||| ||| | ||| || Sbjct 43047 CTTGGATCTTGGAT--TTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAAT 43104 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 | | || || || || || || || ||||||||||||||| Sbjct 43105 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTTT 43144 >seq253 Length=293773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| ||||||||||| | | ||| ||| |||||| |||||||| || Sbjct 106562 GTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCA 106621 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||||||||| || | ||||||||||| ||||| ||| Sbjct 106622 GCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTG 106681 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| |||||| | || ||| | ||| || | || ||||| || ||| Sbjct 106682 ACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTT 106741 Query 18309 TTTACAAAAATTTGCATT 18326 || || || ||||||||| Sbjct 106742 TTAACGAAGATTTGCATT 106759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342631516520