Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq46 156 4e-33
>seq46
Length=215403
Score = 156 bits (172), Expect = 4e-33
Identities = 600/929 (65%), Gaps = 39/929 (4%)
Strand=Plus/Minus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|| |||||| | || | ||||| || ||| | ||||||||||| || ||| || ||||
Sbjct 150049 GAAGAACCAATCTTAAAGGAGAACCCTCGTCGTTTTGTCATGTTCCCAATTAGAT-TCCA 149991
Query 57567 -GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625
|| |||||| | | ||||||||||| ||||| || || ||||| | ||||||| | ||
Sbjct 149990 TGAAATTTGGCAATTTTACAAAAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAAATCGA 149931
Query 57626 CCTGTCTAAGGATCTGAGCGATTGG-GATTCCCTCAAAGAATCTGA-GA-GAAATTTTAT 57682
| ||| ||| | | ||||||| || ||| | ||| || ||| ||| |
Sbjct 149930 TTTAAGTAAAGATTTAAACGATTGGAGA----AATAAATTAAATGACGACGAACGTTTCT 149875
Query 57683 TAAACAC----GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738
| | | | | ||||| || || || || |||||||| ||||| || |||||||
Sbjct 149874 TCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGG 149815
Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798
| |||| || ||| ||||| ||| | | || || | | ||| || || || |||
Sbjct 149814 TTGAAAACTTCTCAGCTGAAGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAA 149755
Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858
| || |||||| | ||||| |||| ||||| || | ||||| || || | ||||
Sbjct 149754 TCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAATCGACACTTATATCAAGG 149695
Query 57859 A--CAACGACGAGAAACGTAGAC----TGTTCAACGCGATCGAAACAATGCCCGCGATCG 57912
| ||| | ||| | ||| ||||||| || || || || || ||
Sbjct 149694 ATCCAAAG----GAA--GCCGACTATTTGTTCAATGCTATTGACCATATTCCATGTATTA 149641
Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA 57972
|||||||| || ||| | | | |||||| | | || ||| || || || |
Sbjct 149640 GAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCTGAAA 149581
Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032
| || | || ||||| || || |||||||| ||||| || || || | || |
Sbjct 149580 GATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCT 149521
Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092
||||| | ||||| | || | ||||| || | || || |||||| || || |
Sbjct 149520 TTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTA 149461
Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152
| || || ||| | |||||||||||||| || || | | ||| || | | |||| ||
Sbjct 149460 GAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCATTTGGAAAATAGAC 149401
Query 58153 CGACGCGGGATCGCATCTTG--GACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210
| || | | | ||| | ||||| ||||| || || || ||||| || ||
Sbjct 149400 C--AGCTGCAGAAATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATT 149343
Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270
|||| || ||| |||| || || | ||||||||| | | || |||| | ||
Sbjct 149342 CTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATA 149283
Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTAC 58325
| |||| |||||||| || ||| | || | | | |||| ||| || ||||
Sbjct 149282 CGTTGAATTTGTTGCTGATAGATTATTAGTAGCA---TTTGGTAATAAGAAGGT--TTAC 149228
Query 58326 AACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTT 58385
|| | ||||| |||||||| ||| | || || | | || ||||| |||||
Sbjct 149227 AATGTCACTAATCCATTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTC 149168
Query 58386 TTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
|||||||| | |||| || ||||||||
Sbjct 149167 TTCGAAAAGAGAGTTTCTGATTATCAAAA 149139
Score = 109 bits (120), Expect = 5e-19
Identities = 412/642 (64%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
|||||| | |||| || | ||| || ||||||| ||| ||| | || | || |
Sbjct 192467 TTCAACTCTCTTCATGAATAAATCTGGAATCCATAAAGCTGGGAATAAATCTCTTGCTCT 192526
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
| || ||||| || |||||| | | ||| | || || || | || ||||||||
Sbjct 192527 AATTTCTTCTTTACCTTGATTCTTTCTAATATCAATGAAATCAAAAATATCAGCATGCCA 192586
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520
|| || | |||| ||||| || || |||||||| || || || ||||| || |||||
Sbjct 192587 TGGTTCTAAATAAAGAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACG 192646
Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580
|| || |||||| | || | | ||| || | || ||||||||| | || ||
Sbjct 192647 AGCAGTATTGTTGAAGACACGGACCATAGGAATGATACCGTTGGAAGTACCATTAGTACC 192706
Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCG 23639
|| | | | ||| | || |||| ||| |||| || ||||| || || || || |
Sbjct 192707 AGCAATATAAGCACCAGTGGCACGAATGTTATGAATATGTAAACCAATACCACCAGCACT 192766
Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699
||| || || | || || || | ||| || || || || || || || || |
Sbjct 192767 CTTT-GAGATTAAAGCACAAGTCTTTAAAGTATCATAAATACCATCAATAGAATCTTCCT 192825
Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759
| | || || |||||||| ||||||||||| | || || ||| | || || | |
Sbjct 192826 TCATTGCAACTAAGAAACAAGAAGACATTTGTGGGTTTGGAGTACCAGCATTAAATAAAG 192885
Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819
| || | || ||||| ||| | ||||||| ||| || | || || |
Sbjct 192886 TTGGAGAACCATGAGTAAAATATTTTTGGGACATTAAATTATAAGATTCAATAACTCTTG 192945
Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC-- 23877
||| || || || || ||||| || || || | ||| || | | ||| ||||| ||
Sbjct 192946 GAATATCATCACCATGAATACCAATAGCAACTCTCATGATTAAATGTTGTGGTCTTTCAG 193005
Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937
| | | | || |||| || | ||| || | || || || || || || |||||
Sbjct 193006 CAACTTTA--CCATTAACACGTAATAAATAGGATCTTTCCAAAGTCTTGAAACCGAAATA 193063
Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
| ||| ||||| |||||||| | || || || ||||| ||
Sbjct 193064 ATTATAATTAAAATCACGATCATAAACAATTGCAGAATTTAA 193105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764750664320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |