Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq46 156 4e-33 >seq46 Length=215403 Score = 156 bits (172), Expect = 4e-33 Identities = 600/929 (65%), Gaps = 39/929 (4%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || |||||| | || | ||||| || ||| | ||||||||||| || ||| || |||| Sbjct 150049 GAAGAACCAATCTTAAAGGAGAACCCTCGTCGTTTTGTCATGTTCCCAATTAGAT-TCCA 149991 Query 57567 -GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 || |||||| | | ||||||||||| ||||| || || ||||| | ||||||| | || Sbjct 149990 TGAAATTTGGCAATTTTACAAAAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAAATCGA 149931 Query 57626 CCTGTCTAAGGATCTGAGCGATTGG-GATTCCCTCAAAGAATCTGA-GA-GAAATTTTAT 57682 | ||| ||| | | ||||||| || ||| | ||| || ||| ||| | Sbjct 149930 TTTAAGTAAAGATTTAAACGATTGGAGA----AATAAATTAAATGACGACGAACGTTTCT 149875 Query 57683 TAAACAC----GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738 | | | | | ||||| || || || || |||||||| ||||| || ||||||| Sbjct 149874 TCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGG 149815 Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 | |||| || ||| ||||| ||| | | || || | | ||| || || || ||| Sbjct 149814 TTGAAAACTTCTCAGCTGAAGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAA 149755 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | || |||||| | ||||| |||| ||||| || | ||||| || || | |||| Sbjct 149754 TCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAATCGACACTTATATCAAGG 149695 Query 57859 A--CAACGACGAGAAACGTAGAC----TGTTCAACGCGATCGAAACAATGCCCGCGATCG 57912 | ||| | ||| | ||| ||||||| || || || || || || Sbjct 149694 ATCCAAAG----GAA--GCCGACTATTTGTTCAATGCTATTGACCATATTCCATGTATTA 149641 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA 57972 |||||||| || ||| | | | |||||| | | || ||| || || || | Sbjct 149640 GAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCTGAAA 149581 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || ||||| || || |||||||| ||||| || || || | || | Sbjct 149580 GATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCT 149521 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 ||||| | ||||| | || | ||||| || | || || |||||| || || | Sbjct 149520 TTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTA 149461 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | || || ||| | |||||||||||||| || || | | ||| || | | |||| || Sbjct 149460 GAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCATTTGGAAAATAGAC 149401 Query 58153 CGACGCGGGATCGCATCTTG--GACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | || | | | ||| | ||||| ||||| || || || ||||| || || Sbjct 149400 C--AGCTGCAGAAATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATT 149343 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 |||| || ||| |||| || || | ||||||||| | | || |||| | || Sbjct 149342 CTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATA 149283 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTAC 58325 | |||| |||||||| || ||| | || | | | |||| ||| || |||| Sbjct 149282 CGTTGAATTTGTTGCTGATAGATTATTAGTAGCA---TTTGGTAATAAGAAGGT--TTAC 149228 Query 58326 AACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTT 58385 || | ||||| |||||||| ||| | || || | | || ||||| ||||| Sbjct 149227 AATGTCACTAATCCATTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTC 149168 Query 58386 TTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 |||||||| | |||| || |||||||| Sbjct 149167 TTCGAAAAGAGAGTTTCTGATTATCAAAA 149139 Score = 109 bits (120), Expect = 5e-19 Identities = 412/642 (64%), Gaps = 6/642 (1%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| | |||| || | ||| || ||||||| ||| ||| | || | || | Sbjct 192467 TTCAACTCTCTTCATGAATAAATCTGGAATCCATAAAGCTGGGAATAAATCTCTTGCTCT 192526 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || |||||| | | ||| | || || || | || |||||||| Sbjct 192527 AATTTCTTCTTTACCTTGATTCTTTCTAATATCAATGAAATCAAAAATATCAGCATGCCA 192586 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | |||| ||||| || || |||||||| || || || ||||| || ||||| Sbjct 192587 TGGTTCTAAATAAAGAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACG 192646 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || |||||| | || | | ||| || | || ||||||||| | || || Sbjct 192647 AGCAGTATTGTTGAAGACACGGACCATAGGAATGATACCGTTGGAAGTACCATTAGTACC 192706 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCG 23639 || | | | ||| | || |||| ||| |||| || ||||| || || || || | Sbjct 192707 AGCAATATAAGCACCAGTGGCACGAATGTTATGAATATGTAAACCAATACCACCAGCACT 192766 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 ||| || || | || || || | ||| || || || || || || || || | Sbjct 192767 CTTT-GAGATTAAAGCACAAGTCTTTAAAGTATCATAAATACCATCAATAGAATCTTCCT 192825 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | || || |||||||| ||||||||||| | || || ||| | || || | | Sbjct 192826 TCATTGCAACTAAGAAACAAGAAGACATTTGTGGGTTTGGAGTACCAGCATTAAATAAAG 192885 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | || | || ||||| ||| | ||||||| ||| || | || || | Sbjct 192886 TTGGAGAACCATGAGTAAAATATTTTTGGGACATTAAATTATAAGATTCAATAACTCTTG 192945 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC-- 23877 ||| || || || || ||||| || || || | ||| || | | ||| ||||| || Sbjct 192946 GAATATCATCACCATGAATACCAATAGCAACTCTCATGATTAAATGTTGTGGTCTTTCAG 193005 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | | | || |||| || | ||| || | || || || || || || ||||| Sbjct 193006 CAACTTTA--CCATTAACACGTAATAAATAGGATCTTTCCAAAGTCTTGAAACCGAAATA 193063 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||| ||||| |||||||| | || || || ||||| || Sbjct 193064 ATTATAATTAAAATCACGATCATAAACAATTGCAGAATTTAA 193105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764750664320