Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq46 178 3e-39 seq276 87.8 4e-12 seq242 87.8 4e-12 >seq46 Length=215403 Score = 178 bits (196), Expect = 3e-39 Identities = 349/507 (69%), Gaps = 18/507 (4%) Strand=Plus/Minus Query 101858 AAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAG-CAATAACG----ATTTGGCGGAAC 101912 ||||||| | |||||| ||| ||||| || || | || | | ||||| | ||| Sbjct 149638 AAGAAGGCTGACTGGGCTCTTAGATGGAT-CACAGACGATGAAGCCTTATTTG-CTGAAA 149581 Query 101913 TAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTT 101972 | | ||||| || ||||| |||||||| || ||||| |||||| ||||||||||||| | Sbjct 149580 GATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCT 149521 Query 101973 TCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTA 102032 | ||| | ||||| || ||| | |||||||| | || | |||||| || || || | || Sbjct 149520 TTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTA 149461 Query 102033 GGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA 102092 | || |||||| | ||| || ||||| || | | || | ||| | ||| Sbjct 149460 GAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCA---TTTGGAAAATA 149404 Query 102093 CCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 ||| | |||| ||| ||||| ||| | ||| || || |||||| | | Sbjct 149403 GACCAGCTGCAGAA---ATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGG 149347 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||| |||| | | || | ||||||| || | || |||||||| ||||| ||| | | Sbjct 149346 AATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTC 149287 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTG-AAATGGGACTAGAAAAGCACTAT 102268 | ||| |||||||||| || |||| | |||| || | | ||| | || | ||| || Sbjct 149286 AATACGTTGAATTTGTTGCTGATAGATTATTAGTAGCATTTGGTAATA-AGAAGGTTTAC 149228 Query 102269 AATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTT 102328 ||||| || || || || |||||||| || ||||| | | |||||||||||| Sbjct 149227 AATGTCACTAATCCATTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTC 149168 Query 102329 TTTGAAAAGAGAGTCGCCGAGTATCAA 102355 || ||||||||||| | || |||||| Sbjct 149167 TTCGAAAAGAGAGTTTCTGATTATCAA 149141 >seq276 Length=61907 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||| || || || || || ||||||||| | ||||||||||||||||||| Sbjct 8849 GAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGTG 8790 Query 35453 ACCTGTTCTTCCGATTATACTGG-AAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511 ||| | | |||||||| || |||| || ||||||||| || | |||||| Sbjct 8789 GATTGTGATGCTGATTATACCGGTCAAGGATA-TGATCAATTACAAGATGTTATAAAGA- 8732 Query 35512 CCTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570 | | ||| |||||| |||||||||| || || ||| | || ||||| || ||| Sbjct 8731 AATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGATT 8672 Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 || ||||| || || ||||| || | | |||||||||||| Sbjct 8671 TTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTGTCAATTTTATGT 8623 >seq242 Length=99814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 237/360 (66%), Gaps = 7/360 (2%) Strand=Plus/Plus Query 93366 TTGAGCTTGGTCAACAAACATACCTC--TCTGAATAGCCATGTCCAAAGTAGTACGAGGA 93423 ||| | ||| |||| || |||||| |||| |||||||||| | || || || Sbjct 7279 TTGGGATTGATCAATGAATTTACCTCGATCTG--TAGCCATGTCAATTATAACTCGTTGA 7336 Query 93424 TTAATTTCCCATACAGTTTTGAATAGTTCCTTGGTCGATTTAGGGATATTAGGAAGCGTC 93483 ||||||||||||| ||| | ||| || |||| | | || ||| |||| Sbjct 7337 CTAATTTCCCATACTGTTCTATATAATTTCTTGATTTCGGTGGGTATACCTGGAATATCT 7396 Query 93484 TGAATAGATCCACCACTTGCCATAATCCTCTGTTTAGTTACTGAATTCCATTCTCCCAGT 93543 || ||||||||| | | |||||| | | | | | ||||||||||| ||| | Sbjct 7397 TGTATAGATCCATTATCTATAATAATCTTATTTCGAACTGCTGAATTCCATAATCCTAAA 7456 Query 93544 TTTATGAGCTCTCTAATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGTACATTA 93603 | ||| | || | || | ||||| || || ||||| || || | | ||| | Sbjct 7457 TCTATTAAATCCTTGATTAAATATTTATTAACAACTTGATATTCACCAGCTAATACTCGA 7516 Query 93604 CGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCA 93663 |||||||| | ||||| || | || ||||| ||||| |||| ||| |||| Sbjct 7517 CGATTATATAAATTGGAAGTATATGGTTCAAAACATTCATTAAACCCCAAGATTTGTGAT 7576 Query 93664 GTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATAC---TTCATA 93720 ||||||||||| |||||||| || || || | |||||| ||| ||| || |||||| Sbjct 7577 GTGGATGCAGTTGGCATGGGTGCTACTAATAATGAATTTCGAAGTCCAAACCGTTTCATA 7636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580247002680