Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq46 178 3e-39
seq276 87.8 4e-12
seq242 87.8 4e-12
>seq46
Length=215403
Score = 178 bits (196), Expect = 3e-39
Identities = 349/507 (69%), Gaps = 18/507 (4%)
Strand=Plus/Minus
Query 101858 AAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAG-CAATAACG----ATTTGGCGGAAC 101912
||||||| | |||||| ||| ||||| || || | || | | ||||| | |||
Sbjct 149638 AAGAAGGCTGACTGGGCTCTTAGATGGAT-CACAGACGATGAAGCCTTATTTG-CTGAAA 149581
Query 101913 TAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTT 101972
| | ||||| || ||||| |||||||| || ||||| |||||| ||||||||||||| |
Sbjct 149580 GATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCT 149521
Query 101973 TCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTA 102032
| ||| | ||||| || ||| | |||||||| | || | |||||| || || || | ||
Sbjct 149520 TTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTA 149461
Query 102033 GGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA 102092
| || |||||| | ||| || ||||| || | | || | ||| | |||
Sbjct 149460 GAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCA---TTTGGAAAATA 149404
Query 102093 CCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149
||| | |||| ||| ||||| ||| | ||| || || |||||| | |
Sbjct 149403 GACCAGCTGCAGAA---ATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGG 149347
Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209
|||| |||| | | || | ||||||| || | || |||||||| ||||| ||| | |
Sbjct 149346 AATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTC 149287
Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTG-AAATGGGACTAGAAAAGCACTAT 102268
| ||| |||||||||| || |||| | |||| || | | ||| | || | ||| ||
Sbjct 149286 AATACGTTGAATTTGTTGCTGATAGATTATTAGTAGCATTTGGTAATA-AGAAGGTTTAC 149228
Query 102269 AATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTT 102328
||||| || || || || |||||||| || ||||| | | ||||||||||||
Sbjct 149227 AATGTCACTAATCCATTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTC 149168
Query 102329 TTTGAAAAGAGAGTCGCCGAGTATCAA 102355
|| ||||||||||| | || ||||||
Sbjct 149167 TTCGAAAAGAGAGTTTCTGATTATCAA 149141
>seq276
Length=61907
Score = 87.8 bits (96), Expect = 4e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452
|| || ||||| || || || || || ||||||||| | |||||||||||||||||||
Sbjct 8849 GAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGTG 8790
Query 35453 ACCTGTTCTTCCGATTATACTGG-AAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511
||| | | |||||||| || |||| || ||||||||| || | ||||||
Sbjct 8789 GATTGTGATGCTGATTATACCGGTCAAGGATA-TGATCAATTACAAGATGTTATAAAGA- 8732
Query 35512 CCTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570
| | ||| |||||| |||||||||| || || ||| | || ||||| || |||
Sbjct 8731 AATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGATT 8672
Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
|| ||||| || || ||||| || | | ||||||||||||
Sbjct 8671 TTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTGTCAATTTTATGT 8623
>seq242
Length=99814
Score = 87.8 bits (96), Expect = 4e-12
Identities = 237/360 (66%), Gaps = 7/360 (2%)
Strand=Plus/Plus
Query 93366 TTGAGCTTGGTCAACAAACATACCTC--TCTGAATAGCCATGTCCAAAGTAGTACGAGGA 93423
||| | ||| |||| || |||||| |||| |||||||||| | || || ||
Sbjct 7279 TTGGGATTGATCAATGAATTTACCTCGATCTG--TAGCCATGTCAATTATAACTCGTTGA 7336
Query 93424 TTAATTTCCCATACAGTTTTGAATAGTTCCTTGGTCGATTTAGGGATATTAGGAAGCGTC 93483
||||||||||||| ||| | ||| || |||| | | || ||| ||||
Sbjct 7337 CTAATTTCCCATACTGTTCTATATAATTTCTTGATTTCGGTGGGTATACCTGGAATATCT 7396
Query 93484 TGAATAGATCCACCACTTGCCATAATCCTCTGTTTAGTTACTGAATTCCATTCTCCCAGT 93543
|| ||||||||| | | |||||| | | | | | ||||||||||| ||| |
Sbjct 7397 TGTATAGATCCATTATCTATAATAATCTTATTTCGAACTGCTGAATTCCATAATCCTAAA 7456
Query 93544 TTTATGAGCTCTCTAATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGTACATTA 93603
| ||| | || | || | ||||| || || ||||| || || | | ||| |
Sbjct 7457 TCTATTAAATCCTTGATTAAATATTTATTAACAACTTGATATTCACCAGCTAATACTCGA 7516
Query 93604 CGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCA 93663
|||||||| | ||||| || | || ||||| ||||| |||| ||| ||||
Sbjct 7517 CGATTATATAAATTGGAAGTATATGGTTCAAAACATTCATTAAACCCCAAGATTTGTGAT 7576
Query 93664 GTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATAC---TTCATA 93720
||||||||||| |||||||| || || || | |||||| ||| ||| || ||||||
Sbjct 7577 GTGGATGCAGTTGGCATGGGTGCTACTAATAATGAATTTCGAAGTCCAAACCGTTTCATA 7636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989580247002680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |