Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq253 87.8 2e-12 >seq253 Length=293773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || |||| ||| | ||| |||||||| | ||||| || ||||| ||||| || || Sbjct 106073 TGACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCA 106132 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || || ||||| | ||||||||||| |||| | |||||| || || || Sbjct 106133 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGT 106192 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||| || || ||| |||| | |||| | | || | ||||| | | || Sbjct 106193 GGAATACCTTCCTTATC-TTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTC 106251 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||| || || || || || ||||| ||||||||| Sbjct 106252 AACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCATA 106303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 ||||| || || | ||||| || ||||| ||||| || || | || || ||| Sbjct 106547 AAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 106606 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | ||||||||||| |||| | |||||| ||||| || || || ||||| || || Sbjct 106607 TCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATC- 106665 Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| |||| | ||| | | || | ||||| | | || || || | ||| | || Sbjct 106666 TTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGT 106725 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| ||||| |||||||| Sbjct 106726 CTTACCGGTTAAAGTTTTAACGAAGATTTGCAT 106758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062164563200