Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq46 356 2e-93 >seq46 Length=215403 Score = 356 bits (394), Expect = 2e-93 Identities = 644/931 (69%), Gaps = 13/931 (1%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 |||| ||||| || |||||||| ||| |||||| ||||| |||||||| || ||| Sbjct 149121 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTA 149180 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || | | ||| || |||||||| |||||||||||||| | |||||| | || || | Sbjct 149181 CCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATT-AGTGACATTGTAAACCTTCTT 149239 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 | ||| | | ||| || |||||||||||||| ||| |||| |||||| ||||||| | Sbjct 149240 ATTACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTT 149299 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||||| | | ||||| | || || || ||||| ||||| |||| Sbjct 149300 ACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGC 149359 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 |||||||| ||||| || |||||| || || || || || | ||| Sbjct 149360 AACAGCCTCAACAATAATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGA 149419 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 || | |||||| ||||||||| ||| | || |||||||||| || | |||||| || Sbjct 149420 GAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGA 149479 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 |||||||| || ||||| || |||| || ||||||||||| || | || ||||| || Sbjct 149480 GAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACC 149539 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| || || ||||| ||||| || || | ||||| ||| |||| | |||| Sbjct 149540 ACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTC 149599 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 | || | |||||| | |||||| |||| || ||| ||||| | || || Sbjct 149600 ATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTC 149659 Query 14102 AATAGCATTAAATAAATATTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAG 14158 ||||||||| || ||||| || |||| |||| | | |||| || || || || || | Sbjct 149660 AATAGCATTGAACAAATAGTCGGCTTC-CTTTGGATCCTTG--ATATAAGTGTCGATTAA 149716 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 | | ||| ||||||| || ||||||||||| || || |||||||| ||| | | Sbjct 149717 AAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTT 149776 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||||| | ||| ||||| | | || |||| |||||||||||||||| ||||| Sbjct 149777 GGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACC 149836 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 ||| ||| ||||| || || | || | ||| ||| | | || || | || | Sbjct 149837 ATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAA 149896 Query 14339 T---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14395 | ||| |||||||| |||||| ||| | ||| | ||| || | ||||| ||| Sbjct 149897 TTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGA 149956 Query 14396 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| |||| ||||| || | | ||| ||||| | || || || || | ||||| Sbjct 149957 AGCTTCAGCCTTTTTGTAAAATTGCCAAATTTCATGGAATCTAATTGGGAACATGACAAA 150016 Query 14456 TC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485 | ||| | | | ||||||| |||||||| Sbjct 150017 ACGACGAGGGTTCTCCTTTAAG-ATTGGTTC 150046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726225006400