Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq46 356 2e-93
>seq46
Length=215403
Score = 356 bits (394), Expect = 2e-93
Identities = 644/931 (69%), Gaps = 13/931 (1%)
Strand=Plus/Plus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|||| ||||| || |||||||| ||| |||||| ||||| |||||||| || |||
Sbjct 149121 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTA 149180
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681
|| | | ||| || |||||||| |||||||||||||| | |||||| | || || |
Sbjct 149181 CCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATT-AGTGACATTGTAAACCTTCTT 149239
Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741
| ||| | | ||| || |||||||||||||| ||| |||| |||||| ||||||| |
Sbjct 149240 ATTACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTT 149299
Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801
||| |||||||||| | | ||||| | || || || ||||| ||||| ||||
Sbjct 149300 ACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGC 149359
Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861
|||||||| ||||| || |||||| || || || || || | |||
Sbjct 149360 AACAGCCTCAACAATAATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGA 149419
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
|| | |||||| ||||||||| ||| | || |||||||||| || | |||||| ||
Sbjct 149420 GAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGA 149479
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|||||||| || ||||| || |||| || ||||||||||| || | || ||||| ||
Sbjct 149480 GAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACC 149539
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
||||| || || ||||| ||||| || || | ||||| ||| |||| | ||||
Sbjct 149540 ACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTC 149599
Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101
| || | |||||| | |||||| |||| || ||| ||||| | || ||
Sbjct 149600 ATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTC 149659
Query 14102 AATAGCATTAAATAAATATTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAG 14158
||||||||| || ||||| || |||| |||| | | |||| || || || || || |
Sbjct 149660 AATAGCATTGAACAAATAGTCGGCTTC-CTTTGGATCCTTG--ATATAAGTGTCGATTAA 149716
Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218
| | ||| ||||||| || ||||||||||| || || |||||||| ||| | |
Sbjct 149717 AAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTT 149776
Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278
||||| | ||| ||||| | | || |||| |||||||||||||||| |||||
Sbjct 149777 GGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACC 149836
Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338
||| ||| ||||| || || | || | ||| ||| | | || || | || |
Sbjct 149837 ATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAA 149896
Query 14339 T---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14395
| ||| |||||||| |||||| ||| | ||| | ||| || | ||||| |||
Sbjct 149897 TTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGA 149956
Query 14396 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455
||| |||| ||||| || | | ||| ||||| | || || || || | |||||
Sbjct 149957 AGCTTCAGCCTTTTTGTAAAATTGCCAAATTTCATGGAATCTAATTGGGAACATGACAAA 150016
Query 14456 TC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485
| ||| | | | ||||||| ||||||||
Sbjct 150017 ACGACGAGGGTTCTCCTTTAAG-ATTGGTTC 150046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479726225006400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |